Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 3.3e-200 701.4 340 100.0
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 6.5e-180 634.0 341 87.4
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 5.1e-177 624.4 340 86.5
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 1.5e-176 622.9 340 86.2
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.3e-175 619.8 340 87.1
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.3e-175 619.8 340 87.1
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.3e-175 619.8 340 87.1
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.3e-175 619.8 341 85.3
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 8.2e-175 617.1 341 84.8
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.1e-174 616.7 341 86.8
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.1e-174 614.8 341 84.5
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 4.1e-174 614.8 341 85.3
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.0e-173 612.5 341 84.2
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.5e-173 611.7 341 85.3
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 3.8e-172 608.2 341 83.3
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 6.5e-172 607.4 341 84.2
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.4e-171 606.3 341 83.9
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 3.2e-171 605.1 339 84.1
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.6e-170 601.7 341 83.9
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 8.0e-170 600.5 339 82.9
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 8.0e-170 600.5 342 83.9
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.0e-169 600.1 342 84.8
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 2.0e-168 595.9 339 82.3
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 3.3e-168 595.1 339 82.3
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.3e-167 593.2 339 82.3
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.7e-167 592.8 342 81.3
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.7e-167 592.8 340 82.9
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.7e-167 592.8 341 82.1
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 6.3e-167 590.9 341 80.9
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 6.3e-167 590.9 340 80.3
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 6.3e-167 590.9 338 82.8
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 8.2e-167 590.5 341 80.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 8.2e-167 590.5 376 76.3
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 8.2e-167 590.5 339 81.4
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 7.0e-166 587.4 341 80.9
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 9.1e-166 587.0 341 80.1
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.2e-165 586.6 341 80.4
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.6e-165 586.3 341 81.2
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 2.0e-165 585.9 341 82.4
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 4.5e-165 584.7 340 79.4
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 5.9e-165 584.3 341 80.1
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 5.9e-165 584.3 341 79.2
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.0e-164 583.6 341 80.1
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.7e-164 582.8 377 75.6
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 2.2e-164 582.4 366 76.2
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.2e-164 582.4 338 82.2
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 6.5e-164 580.9 340 80.6
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 8.5e-164 580.5 341 79.2
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 8.5e-164 580.5 341 80.6
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 2.5e-163 578.9 340 80.0
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 3.2e-163 578.6 343 78.7
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.2e-163 578.2 341 80.4
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 5.5e-163 577.8 341 80.1
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.5e-163 577.8 340 80.3
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 9.4e-163 577.0 340 79.7
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.6e-162 576.2 341 79.5
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 2.1e-162 575.9 338 79.0
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.6e-162 575.1 340 79.1
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.7e-162 574.7 333 80.5
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 8.0e-162 573.9 341 78.6
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.0e-161 573.5 341 78.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.8e-161 572.8 341 78.0
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 3.0e-161 572.0 339 80.5
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.0e-161 571.6 340 79.1
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 5.2e-161 571.2 339 79.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 5.2e-161 571.2 342 77.2
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 6.8e-161 570.9 317 87.4
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 6.8e-161 570.9 341 77.7
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.2e-160 570.1 341 78.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.2e-160 570.1 371 73.6
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.5e-160 569.7 326 81.6
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 5.7e-160 567.8 340 78.2
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.3e-159 566.6 340 76.2
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.3e-159 566.6 341 78.0
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.2e-159 565.8 340 76.5
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 2.8e-159 565.5 340 76.5
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 3.7e-159 565.1 340 76.2
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 6.3e-159 564.3 340 76.2
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 6.3e-159 564.3 339 76.4
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 6.3e-159 564.3 339 76.4
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 6.3e-159 564.3 340 76.5
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 8.3e-159 563.9 355 74.6
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 8.3e-159 563.9 340 76.2
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.3e-159 563.9 339 77.0
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.8e-158 562.8 340 75.9
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 2.4e-158 562.4 340 77.6
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 3.1e-158 562.0 345 75.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 5.3e-158 561.2 339 75.8
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 5.3e-158 561.2 339 75.8
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 7.0e-158 560.8 343 78.4
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.6e-157 559.7 344 77.3
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 2.7e-157 558.9 322 81.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.6e-154 549.7 344 75.3
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 3.6e-154 548.5 342 76.9
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 6.1e-154 547.7 356 73.0
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.8e-148 528.5 340 75.6
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 9.5e-147 523.9 304 83.9
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.2e-145 518.1 349 69.6
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 9.8e-144 513.8 341 72.1
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-143 513.1 341 70.7
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 3.3e-139 498.8 341 70.1
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.6e-138 496.5 303 76.9
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.0e-137 493.8 341 72.4
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 2.6e-136 489.2 343 70.3
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 9.2e-134 480.7 256 89.5
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 9.2e-134 480.7 342 66.7
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.7e-132 476.5 339 65.8
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.3e-132 476.1 304 73.0
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 8.0e-130 467.6 321 69.2
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 4.4e-128 461.8 328 66.8
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.4e-126 456.8 356 60.1
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 3.6e-122 442.2 296 70.9
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 3.6e-122 442.2 296 70.9
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 4.4e-120 435.3 345 61.2
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 3.3e-115 419.1 347 62.0
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 3.4e-112 409.1 298 66.1
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 3.8e-111 405.6 368 54.9
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 5.6e-107 391.7 269 70.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 3.6e-106 389.0 263 70.3
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 4.0e-105 385.6 284 65.8
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 5.3e-105 385.2 293 65.2
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.6e-98 363.6 354 52.8
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.9e-87 326.2 208 74.5
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.3e-71 274.2 346 42.5
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 4.1e-57 226.1 212 52.8
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.5e-54 217.6 238 46.6
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 1.7e-50 204.1 110 88.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 6.1e-45 185.7 520 29.0
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 9.1e-41 171.8 108 75.9
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.6e-35 153.7 414 30.0
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 7.0e-33 145.6 82 75.6
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.5e-30 137.1 89 75.3
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.1e-22 111.7 74 73.0
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.0e-20 105.1 68 72.1
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 2.3e-20 104.0 60 76.7
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 8.9e-20 102.1 68 69.1
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 8.9e-20 102.1 68 70.6
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 8.9e-20 102.1 68 69.1
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 1.2e-19 101.7 67 71.6
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.2e-19 101.7 91 56.0
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 4.4e-19 99.8 69 68.1
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 7.5e-19 99.0 68 67.6
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 9.8e-19 98.6 67 68.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 1.3e-18 98.2 68 67.6
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.7e-18 97.8 68 69.1
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 1.5e-11 74.7 85 50.6
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.9e-09 67.8 52 65.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 4.1e-09 66.6 45 73.3


User provided reference genes

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