Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 3.4e-49 198.0 98 100.0
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.0e-25 119.0 98 66.3
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 1.6e-22 109.4 91 65.9
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 3.6e-22 108.2 97 55.7
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 1.0e-21 106.7 94 58.5
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 1.8e-21 105.9 99 61.6
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 5.2e-21 104.4 86 69.8
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.4e-20 101.3 83 68.7
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 9.7e-20 100.1 86 60.5
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.7e-19 99.4 99 51.5
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 4.8e-19 97.8 99 53.5
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.4e-18 96.3 97 56.7
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.4e-18 95.5 93 53.8
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 3.1e-18 95.1 89 55.1
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 4.1e-18 94.7 97 57.7
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 5.3e-18 94.4 109 51.4
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 5.3e-18 94.4 93 55.9
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 9.1e-18 93.6 85 55.3
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 9.1e-18 93.6 97 55.7
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.2e-17 93.2 97 54.6
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.2e-17 93.2 98 52.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.6e-17 92.8 99 52.5
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.9e-17 90.9 97 53.6
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 7.7e-17 90.5 98 54.1
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.0e-16 90.1 93 51.6
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.0e-16 90.1 97 53.6
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.7e-16 89.4 97 53.6
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.5e-15 86.3 99 50.5
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.9e-15 85.9 103 48.5
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 1.9e-15 85.9 99 50.5
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.5e-15 85.5 103 48.5
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.5e-15 85.5 103 48.5
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 2.5e-15 85.5 88 59.1
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 9.4e-15 83.6 98 46.9
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 3.6e-14 81.6 85 49.4
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 8.0e-14 80.5 97 48.5
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 1.8e-13 79.3 90 50.0
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 2.3e-13 79.0 101 46.5
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.3e-13 79.0 84 50.0
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 1.2e-12 76.6 109 44.0
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 1.5e-12 76.3 98 44.9
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 1.5e-12 76.3 85 50.6
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.5e-12 76.3 101 47.5
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.0e-12 75.9 96 49.0
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 4.4e-12 74.7 94 50.0
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 5.7e-12 74.3 96 44.8
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 7.5e-12 73.9 100 44.0
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 1.3e-11 73.2 91 48.4
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.7e-11 72.8 104 45.2
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.2e-11 72.4 100 44.0
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 2.2e-11 72.4 97 48.5
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 3.7e-11 71.6 98 45.9
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 4.8e-11 71.2 100 43.0
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 1.1e-10 70.1 94 41.5
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 1.4e-10 69.7 94 44.7
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 1.8e-10 69.3 83 47.0
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 2.4e-10 68.9 99 41.4
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.4e-10 68.9 91 44.0
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 3.1e-10 68.6 96 41.7
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 4.1e-10 68.2 96 43.8
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 4.1e-10 68.2 95 45.3
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 4.1e-10 68.2 93 47.3
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 5.4e-10 67.8 97 45.4
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 5.4e-10 67.8 98 41.8
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 7.0e-10 67.4 87 46.0
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 7.0e-10 67.4 99 42.4
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 1.6e-09 66.2 94 42.6
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.6e-09 66.2 95 40.0
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.6e-09 66.2 90 43.3
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 2.7e-09 65.5 101 42.6
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 2.7e-09 65.5 101 42.6
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 2.7e-09 65.5 93 43.0
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.7e-09 65.5 112 45.5
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 3.5e-09 65.1 63 55.6
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 3.5e-09 65.1 48 68.8
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.5e-09 65.1 109 39.4
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 4.5e-09 64.7 94 42.6
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 4.5e-09 64.7 100 37.0
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 4.5e-09 64.7 93 41.9
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 4.5e-09 64.7 98 38.8
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 5.9e-09 64.3 84 45.2
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 5.9e-09 64.3 70 54.3
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 7.7e-09 63.9 94 42.6
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 7.7e-09 63.9 94 43.6
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 1.0e-08 63.5 90 45.6
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 1.0e-08 63.5 92 41.3
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 1.0e-08 63.5 101 43.6
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 1.0e-08 63.5 95 44.2
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.3e-08 63.2 108 41.7
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.7e-08 62.8 85 42.4
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.7e-08 62.8 108 38.0
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.2e-08 62.4 108 38.0
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 2.2e-08 62.4 83 44.6
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.9e-08 62.0 98 44.9
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 3.8e-08 61.6 89 43.8
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 5.0e-08 61.2 85 42.4
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 6.5e-08 60.8 110 37.3
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 6.5e-08 60.8 99 49.5
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 6.5e-08 60.8 85 47.1
Cpa.g.sc5.310 Carica papaya HOM05D004965 ORTHO05D004401 8.5e-08 60.5 68 52.9
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 8.5e-08 60.5 95 40.0
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 8.5e-08 60.5 103 39.8
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 1.1e-07 60.1 93 41.9
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 1.1e-07 60.1 103 37.9
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.1e-07 60.1 105 40.0
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 1.1e-07 60.1 87 43.7
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 1.5e-07 59.7 93 41.9
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.5e-07 59.7 105 40.0
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.5e-07 59.7 93 38.7
BolC9t53314H Brassica oleracea HOM05D009946 ORTHO05D004401 2.5e-07 58.9 93 40.9
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 2.5e-07 58.9 35 77.1
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.5e-07 58.9 94 42.6
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.2e-07 58.5 108 37.0
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.2e-07 58.5 98 40.8
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 4.2e-07 58.2 105 39.0
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 4.2e-07 58.2 84 42.9
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 5.5e-07 57.8 97 48.5
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 7.2e-07 57.4 116 36.2
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 7.2e-07 57.4 43 72.1
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 7.2e-07 57.4 45 57.8
Sopen02g032220 Solanum pennellii HOM05D021089 ORTHO05D022961 7.2e-07 57.4 146 29.5
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 9.4e-07 57.0 84 41.7
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 9.4e-07 57.0 87 39.1
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.6e-06 56.2 105 40.0
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 2.1e-06 55.8 108 34.3
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 2.1e-06 55.8 90 42.2
A02p16280 Brassica napus HOM05D010176 ORTHO05D012455 2.7e-06 55.5 91 37.4
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.7e-06 55.5 33 75.8
Thhalv10019352m.g Eutrema salsugineum HOM05D010176 ORTHO05D012455 2.7e-06 55.5 93 37.6
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 4.7e-06 54.7 85 37.6
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.7e-06 54.7 32 78.1
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 4.7e-06 54.7 31 77.4
C07p37510 Brassica napus HOM05D009946 ORTHO05D004401 6.1e-06 54.3 94 40.4
BolC7t44264H Brassica oleracea HOM05D009946 ORTHO05D004401 6.1e-06 54.3 94 40.4
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.1e-06 54.3 32 75.0
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 6.1e-06 54.3 32 75.0
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 8.0e-06 53.9 81 42.0


User provided reference genes

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