Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 0.0e+00 1252.7 625 100.0
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.7e-263 912.5 613 73.9
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.7e-263 912.5 613 74.1
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 4.3e-262 907.9 612 74.7
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 1.5e-251 872.8 614 72.6
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 2.0e-243 845.9 618 71.7
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 3.4e-235 818.5 615 68.6
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 8.2e-221 770.8 625 64.5
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 1.2e-219 766.9 623 66.8
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 7.6e-219 764.2 615 66.3
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 2.9e-218 762.3 614 64.5
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 1.4e-217 760.0 614 62.9
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 1.5e-214 750.0 651 62.8
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 9.7e-214 747.3 649 62.4
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 9.7e-214 747.3 612 63.2
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 1.7e-213 746.5 619 63.0
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 9.4e-209 730.7 626 62.3
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 9.4e-209 730.7 615 63.9
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 7.9e-208 727.6 615 62.1
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 7.4e-206 721.1 619 61.4
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 9.7e-206 720.7 522 68.6
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 2.2e-202 709.5 623 61.2
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 5.0e-202 708.4 619 60.9
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 6.5e-202 708.0 612 61.3
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 1.9e-201 706.4 614 61.6
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 9.4e-201 704.1 624 60.9
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 2.7e-200 702.6 619 61.9
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 3.6e-200 702.2 619 60.7
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 4.7e-200 701.8 624 60.7
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 5.2e-199 698.4 642 59.7
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 6.7e-199 698.0 613 60.0
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.5e-198 696.8 621 61.7
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.3e-198 695.7 640 59.1
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 9.7e-198 694.1 615 60.8
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.7e-197 693.3 627 60.4
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 3.7e-197 692.2 619 59.5
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.0e-195 686.4 612 60.0
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 6.5e-194 681.4 653 57.6
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 9.4e-193 677.6 629 57.4
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 9.4e-193 677.6 578 62.6
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 2.1e-192 676.4 619 59.5
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 4.4e-190 668.7 622 59.2
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 9.1e-188 661.0 616 57.6
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 1.6e-187 660.2 633 56.6
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.6e-187 660.2 612 57.5
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 1.3e-186 657.1 617 58.5
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 1.1e-185 654.1 646 57.0
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 2.5e-185 652.9 621 58.3
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 3.2e-185 652.5 515 65.6
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 7.2e-185 651.4 615 56.6
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 9.4e-185 651.0 548 61.9
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 8.0e-184 647.9 666 56.6
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 8.0e-184 647.9 594 58.8
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 8.8e-183 644.4 629 55.3
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 2.0e-182 643.3 613 57.4
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 4.4e-182 642.1 625 57.6
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 1.4e-180 637.1 613 57.3
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 1.0e-178 630.9 615 55.9
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 2.5e-177 626.3 617 56.1
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 3.3e-177 625.9 519 63.4
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 4.2e-177 625.5 571 57.8
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 6.1e-176 621.7 615 56.4
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 2.3e-175 619.8 620 55.3
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 6.8e-175 618.2 617 55.6
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 6.8e-175 618.2 546 59.7
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.5e-174 617.1 570 59.6
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 4.9e-173 612.1 614 55.9
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 4.1e-172 609.0 600 55.5
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.2e-171 607.4 677 51.1
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 3.5e-171 605.9 603 55.6
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 5.0e-170 602.1 601 54.9
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.5e-169 600.5 560 56.6
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.5e-169 600.5 618 53.7
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 2.5e-169 599.7 604 54.1
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 1.2e-168 597.4 612 53.4
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 1.8e-167 593.6 625 54.4
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 4.0e-167 592.4 662 52.0
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 4.1e-164 582.4 617 51.9
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 1.2e-163 580.9 575 54.3
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 1.6e-163 580.5 638 51.9
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 5.0e-162 575.5 621 52.7
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 4.3e-161 572.4 639 51.3
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 5.6e-161 572.0 494 61.3
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 9.5e-161 571.2 632 50.8
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 4.4e-158 562.4 625 51.5
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 6.0e-155 552.0 573 53.6
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 1.7e-154 550.4 515 56.3
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.6e-152 542.7 442 63.1
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 3.1e-151 539.7 619 50.1
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 5.2e-151 538.9 629 49.9
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 1.3e-149 534.3 573 52.5
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 2.4e-148 530.0 605 50.7
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 8.1e-144 515.0 561 51.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.1e-140 504.6 638 47.5
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 2.6e-134 483.4 603 46.1
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 6.4e-133 478.8 412 58.5
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 9.3e-124 448.4 298 79.9
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 2.1e-123 447.2 487 48.7
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.1e-99 367.5 454 49.1
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 3.0e-90 337.0 457 40.5
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 6.7e-90 335.9 555 38.0
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 2.8e-88 330.5 462 40.5
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 3.2e-84 317.0 569 37.4
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 2.0e-73 281.2 192 77.1
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.7e-64 250.4 209 64.6
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 7.8e-54 216.1 317 41.0
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 4.0e-42 177.2 561 27.5
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 5.1e-29 133.7 430 27.2
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 5.6e-28 130.2 576 24.3
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 5.2e-26 123.6 123 56.1
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 6.8e-26 123.2 123 54.5
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 6.8e-26 123.2 123 54.5
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.0e-25 121.7 132 51.5
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 2.0e-25 121.7 132 51.5
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 1.7e-24 118.6 366 30.6
Dinv40115 Davidia involucrata HOM05D006562 ORTHO05D008230 3.6e-19 100.9 68 77.9
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 6.2e-19 100.1 67 73.1
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 5.3e-18 97.1 202 37.6
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 8.7e-13 79.7 113 42.5
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 3.1e-10 71.2 79 55.7
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 9.9e-09 66.2 320 22.8
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 9.9e-09 66.2 320 22.8
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 1.9e-07 62.0 311 21.9
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 2.4e-07 61.6 288 22.9
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 5.4e-07 60.5 320 19.7
CAN.G1274.30 Capsicum annuum HOM05D006562 ORTHO05D008230 9.3e-07 59.7 66 48.5


User provided reference genes

Program Settings