Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 5.0e-105 384.4 190 100.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.7e-68 261.9 164 79.3
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.3e-64 248.4 183 71.6
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 6.8e-62 241.1 169 73.4
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.8e-60 235.3 165 75.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.3e-57 226.1 158 70.9
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.3e-56 221.1 165 67.3
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.3e-56 221.1 165 67.3
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 9.6e-56 220.7 169 68.6
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.6e-55 219.9 159 71.7
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.1e-55 219.5 158 72.2
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 4.0e-54 215.3 165 65.5
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.6e-53 212.6 178 61.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 4.4e-53 211.8 166 65.1
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 9.9e-53 210.7 159 69.8
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.9e-52 209.1 181 60.8
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.4e-51 206.8 169 63.9
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.9e-51 206.5 165 63.0
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.4e-51 206.1 214 54.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.6e-50 203.4 165 63.0
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 2.1e-50 203.0 169 62.7
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.1e-49 198.4 165 62.4
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.1e-49 198.4 171 62.0
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 8.7e-49 197.6 169 61.5
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.9e-48 196.4 167 59.9
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 4.3e-48 195.3 165 60.6
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 9.6e-48 194.1 169 60.9
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.1e-47 193.0 206 53.4
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.1e-46 190.7 167 64.7
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.4e-46 190.3 176 57.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 4.0e-46 188.7 167 58.1
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.0e-46 188.7 172 57.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 5.3e-46 188.3 167 60.5
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.4e-45 185.7 175 57.7
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 6.4e-44 181.4 173 57.8
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.1e-43 180.6 166 54.8
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.2e-43 179.1 187 52.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 7.1e-43 177.9 169 55.0
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.2e-42 177.2 187 52.4
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.6e-42 176.8 163 58.3
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.5e-42 175.6 170 57.1
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.0e-41 174.1 165 57.0
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.8e-41 173.3 166 56.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.3e-39 167.2 188 49.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.1e-39 166.4 170 56.5
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 8.1e-39 164.5 199 46.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 8.1e-39 164.5 155 56.8
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 8.1e-39 164.5 166 56.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.4e-37 159.1 158 55.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 4.5e-37 158.7 185 48.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.8e-37 158.3 172 54.7
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.2e-36 156.4 138 61.6
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.2e-36 156.4 201 47.8
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.9e-36 156.0 158 54.4
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.9e-36 155.2 172 49.4
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 8.4e-36 154.5 188 47.3
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.5e-35 152.9 191 48.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 4.2e-35 152.1 167 52.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 4.2e-35 152.1 138 58.7
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.3e-35 151.0 118 69.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.2e-34 150.6 143 59.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.6e-34 150.2 164 52.4
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.6e-34 150.2 190 45.3
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.6e-34 150.2 150 54.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 6.0e-34 148.3 162 55.6
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.3e-33 147.1 168 50.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.3e-33 146.4 158 51.9
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.3e-33 146.4 139 56.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 8.7e-33 144.4 188 42.6
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 8.7e-33 144.4 89 79.8
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 8.7e-33 144.4 150 52.7
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.1e-32 144.1 109 64.2
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 3.3e-32 142.5 185 42.2
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 7.4e-32 141.4 157 49.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 9.6e-32 141.0 167 47.3
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.6e-31 140.2 158 50.0
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.1e-31 139.8 189 45.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.3e-31 138.3 168 50.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-30 137.1 168 50.0
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 4.1e-30 135.6 166 44.0
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 4.1e-30 135.6 189 43.9
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 4.1e-30 135.6 189 43.9
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.9e-30 134.8 213 40.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.9e-30 134.8 213 40.4
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 9.0e-30 134.4 170 48.2
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 9.0e-30 134.4 167 44.9
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.2e-29 134.0 189 43.4
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.2e-29 134.0 189 43.4
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-29 133.3 171 45.6
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.0e-29 133.3 186 46.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 7.6e-29 131.3 166 48.2
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 8.4e-28 127.9 167 47.9
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-27 127.1 83 77.1
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.9e-27 126.7 156 47.4
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.9e-27 126.7 108 56.5
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.5e-27 126.3 194 41.8
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.2e-27 125.9 114 56.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.2e-27 125.6 93 67.7
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 4.2e-27 125.6 172 45.3
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.6e-26 123.6 227 36.1
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.6e-26 122.1 134 47.0
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 7.9e-26 121.3 112 58.9
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 3.9e-25 119.0 92 62.0
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.5e-24 116.3 178 42.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 7.4e-24 114.8 166 41.6
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 2.8e-23 112.8 171 42.7
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.8e-23 112.1 86 67.4
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 8.2e-23 111.3 86 65.1
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.4e-22 109.8 130 44.6
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.4e-22 109.8 160 40.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.1e-22 109.0 179 40.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 6.9e-22 108.2 130 44.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-21 107.5 158 42.4
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.5e-21 105.5 104 52.9
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.3e-20 104.0 86 61.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.5e-19 99.8 102 53.9
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 5.5e-19 98.6 204 29.9
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 5.5e-19 98.6 79 63.3
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 7.9e-18 94.7 166 34.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.0e-17 94.4 84 56.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.3e-17 93.2 111 48.6
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.1e-17 92.0 167 35.3
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 5.1e-17 92.0 209 35.9
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-14 84.0 100 45.0
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.8e-14 83.6 84 52.4
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 5.3e-14 82.0 200 34.0
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 7.7e-13 78.2 107 43.9
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.9e-12 76.3 131 36.6
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 5.5e-11 72.0 138 35.5
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 4.7e-10 68.9 82 47.6
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 6.1e-10 68.6 144 33.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.4e-09 67.4 87 39.1
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 8.8e-09 64.7 88 39.8
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 8.8e-09 64.7 93 37.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.1e-08 64.3 128 35.2
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.5e-08 63.9 58 48.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.3e-08 62.8 61 50.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.3e-07 60.8 195 31.3
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 8.2e-07 58.2 47 59.6
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-06 57.4 89 40.4
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-06 57.0 89 40.4
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 9.1e-06 54.7 184 32.1


User provided reference genes

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