Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 3.8e-102 374.8 182 100.0
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 5.5e-77 291.2 179 82.7
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.7e-54 216.5 172 65.7
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 5.0e-54 214.9 175 65.7
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 5.6e-53 211.5 175 66.9
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 3.1e-51 205.7 178 62.4
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 3.1e-51 205.7 177 62.7
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 6.8e-51 204.5 175 64.0
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.9e-49 199.1 176 59.7
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 6.4e-49 198.0 188 60.1
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 6.0e-47 191.4 182 60.4
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 8.6e-46 187.6 181 58.6
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 1.9e-45 186.4 189 62.4
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 2.3e-43 179.5 190 53.2
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 5.2e-43 178.3 175 55.4
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 2.6e-42 176.0 174 54.0
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 3.7e-41 172.2 183 54.6
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 3.7e-41 172.2 180 55.0
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.9e-41 171.8 185 55.7
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 4.9e-41 171.8 180 52.8
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 4.9e-41 171.8 180 56.7
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.4e-40 169.5 185 55.1
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.7e-39 166.0 171 55.6
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 4.6e-39 165.2 171 55.6
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 7.8e-39 164.5 164 51.8
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.3e-38 163.7 160 55.6
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.7e-38 163.3 194 51.0
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 3.0e-38 162.5 184 50.0
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 3.9e-38 162.2 160 56.2
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 3.9e-38 162.2 155 55.5
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 6.6e-38 161.4 152 57.2
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 5.6e-37 158.3 177 52.5
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 7.3e-37 157.9 172 54.7
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.2e-36 157.1 164 50.6
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.2e-36 157.1 164 50.6
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 2.8e-36 156.0 148 57.4
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 8.1e-36 154.5 176 51.1
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 8.1e-36 154.5 172 54.7
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 2.3e-35 152.9 170 50.0
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 3.1e-35 152.5 176 52.8
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 8.9e-35 151.0 143 58.0
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 8.9e-35 151.0 180 51.1
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 1.5e-34 150.2 207 44.4
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.8e-34 148.3 183 47.5
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 7.6e-34 147.9 216 43.1
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 7.6e-34 147.9 163 52.1
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 2.9e-33 146.0 158 51.3
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 4.9e-33 145.2 157 50.3
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.9e-32 143.3 153 51.6
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 3.2e-32 142.5 189 46.6
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 5.4e-32 141.7 162 46.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 5.4e-32 141.7 176 46.6
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 1.2e-31 140.6 204 44.1
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.2e-31 140.6 151 48.3
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 1.6e-31 140.2 171 46.8
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 2.7e-31 139.4 201 45.3
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 4.6e-31 138.7 201 43.8
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 6.0e-31 138.3 147 50.3
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.3e-30 136.3 166 48.8
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 3.9e-30 135.6 166 45.8
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 5.1e-30 135.2 170 45.9
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 5.1e-30 135.2 148 50.0
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 5.1e-30 135.2 154 47.4
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.5e-29 133.7 184 45.1
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.5e-29 132.9 181 44.8
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 4.3e-29 132.1 183 45.9
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 4.3e-29 132.1 171 44.4
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 1.2e-28 130.6 146 51.4
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 2.1e-28 129.8 168 47.0
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.6e-28 129.0 179 46.9
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 4.7e-28 128.6 158 47.5
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 4.7e-28 128.6 185 45.4
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 4.7e-28 128.6 194 44.8
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 4.7e-28 128.6 149 49.0
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 6.2e-28 128.3 147 50.3
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.1e-27 127.5 168 46.4
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.1e-27 127.5 183 44.8
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 1.8e-27 126.7 153 48.4
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 2.4e-27 126.3 168 46.4
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 4.0e-27 125.6 164 47.0
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 4.0e-27 125.6 145 48.3
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.2e-26 124.0 175 43.4
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.0e-26 123.2 133 50.4
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.0e-26 123.2 181 40.9
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 2.0e-26 123.2 182 40.7
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.4e-26 122.5 220 39.1
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 5.8e-26 121.7 161 42.9
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 5.8e-26 121.7 180 41.7
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 5.8e-26 121.7 180 41.7
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 9.9e-26 120.9 219 37.0
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 9.9e-26 120.9 157 50.3
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.7e-25 120.2 194 42.8
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-25 120.2 180 41.1
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.7e-25 120.2 171 45.6
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.7e-25 120.2 181 41.4
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.7e-25 120.2 181 41.4
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 2.2e-25 119.8 182 44.0
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 2.2e-25 119.8 166 44.0
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 2.9e-25 119.4 139 46.0
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 3.8e-25 119.0 147 47.6
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 4.9e-25 118.6 189 41.8
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 4.9e-25 118.6 148 45.9
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 8.4e-25 117.9 173 45.7
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 1.4e-24 117.1 229 35.8
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.4e-24 117.1 222 34.7
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 3.2e-24 115.9 200 42.5
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 4.2e-24 115.5 218 37.6
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 5.4e-24 115.2 174 42.5
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.1e-24 114.8 195 39.0
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 7.1e-24 114.8 122 48.4
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 6.0e-23 111.7 207 38.2
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 2.3e-22 109.8 136 45.6
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 8.7e-22 107.8 140 47.1
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.9e-21 106.7 129 47.3
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 3.3e-21 105.9 217 33.6
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 7.3e-21 104.8 213 37.1
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.6e-20 103.6 221 33.0
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 8.1e-20 101.3 132 43.9
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.4e-19 100.5 241 35.3
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.8e-19 100.1 94 54.3
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 2.6e-18 96.3 124 50.0
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 1.6e-15 87.0 95 53.7
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 2.7e-15 86.3 121 38.8
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 1.5e-13 80.5 116 42.2
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 1.5e-13 80.5 116 42.2
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.5e-13 79.7 98 46.9
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 3.3e-13 79.3 150 36.0
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 2.8e-12 76.3 137 38.0
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 3.6e-12 75.9 136 35.3
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 4.8e-12 75.5 150 36.7
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 4.8e-12 75.5 161 30.4
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 4.8e-12 75.5 143 35.7
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 2.4e-11 73.2 128 35.9
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 2.0e-10 70.1 172 36.6
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 4.2e-08 62.4 51 62.7
VMungo0464G1178 Vigna mungo HOM05D005169 ORTHO05D006436 7.1e-08 61.6 134 32.8
CDE06G1771 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 9.3e-08 61.2 52 53.8
SEGI_22807 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 9.3e-08 61.2 157 25.5
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 1.6e-07 60.5 51 60.8
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 1.6e-07 60.5 51 60.8
CDE04G0766 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.3e-06 57.4 52 51.9


User provided reference genes

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