Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 5.8e-109 397.5 193 100.0
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 8.2e-71 270.8 190 69.5
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 9.1e-70 267.3 189 69.3
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.9e-68 262.3 188 69.1
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 2.1e-66 256.1 191 68.1
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 5.3e-62 241.5 198 62.1
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 9.1e-62 240.7 189 64.0
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 9.1e-62 240.7 193 63.2
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.5e-61 240.0 189 64.6
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.5e-61 238.8 195 62.6
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 4.5e-61 238.4 189 60.8
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 5.9e-61 238.0 162 69.8
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 7.7e-61 237.7 195 61.5
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.9e-60 235.7 196 62.2
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.9e-60 235.7 196 62.2
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 5.0e-60 235.0 195 61.5
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.9e-59 233.0 188 61.7
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 3.2e-59 232.3 145 75.2
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 4.2e-59 231.9 196 61.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 4.2e-59 231.9 188 62.8
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.6e-58 229.9 166 66.3
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 2.1e-58 229.6 176 67.6
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 3.6e-58 228.8 188 59.6
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 6.1e-58 228.0 188 61.7
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 8.0e-58 227.6 188 60.6
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 8.0e-58 227.6 174 69.5
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.4e-57 226.9 151 71.5
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.4e-57 226.9 173 68.8
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 2.3e-57 226.1 170 64.1
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.3e-57 226.1 189 58.7
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.9e-57 225.3 191 58.1
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 5.2e-57 224.9 167 65.9
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 6.7e-57 224.6 190 62.6
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 6.7e-57 224.6 188 61.2
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 8.8e-57 224.2 172 65.1
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.3e-56 222.2 191 57.6
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 3.3e-56 222.2 191 57.6
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 3.3e-56 222.2 188 60.6
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 7.4e-56 221.1 189 59.8
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 7.4e-56 221.1 193 58.5
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.3e-55 220.3 191 59.2
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 2.2e-55 219.5 162 66.0
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 4.8e-55 218.4 140 73.6
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 6.3e-55 218.0 189 60.3
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 8.2e-55 217.6 145 72.4
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 8.2e-55 217.6 175 64.0
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.8e-54 216.5 190 58.9
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 2.4e-54 216.1 170 64.1
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 5.3e-54 214.9 129 78.3
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 9.1e-54 214.2 190 57.4
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.0e-52 210.7 193 56.5
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.3e-52 210.3 171 63.2
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.7e-52 209.9 158 63.9
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 2.9e-52 209.1 150 67.3
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 6.5e-52 208.0 150 65.3
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 6.5e-52 208.0 190 56.8
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-51 206.8 193 56.5
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.9e-51 206.5 163 61.3
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.5e-51 206.1 198 55.6
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 7.2e-51 204.5 193 56.0
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.6e-50 203.4 154 62.3
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.6e-50 203.4 198 55.6
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 3.6e-50 202.2 184 56.5
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 3.6e-50 202.2 125 73.6
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.6e-50 202.2 183 57.4
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 3.6e-50 202.2 171 61.4
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 4.7e-50 201.8 127 74.0
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 6.1e-50 201.4 152 63.8
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 6.1e-50 201.4 127 73.2
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 6.1e-50 201.4 157 62.4
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 5.2e-49 198.4 153 60.8
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 8.8e-49 197.6 142 66.2
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 8.8e-49 197.6 142 66.2
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.2e-48 197.2 158 62.7
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 2.6e-48 196.1 166 60.8
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 2.6e-48 196.1 125 73.6
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 3.4e-48 195.7 125 71.2
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 3.4e-48 195.7 125 72.8
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 4.4e-48 195.3 166 61.4
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 5.7e-48 194.9 142 64.8
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 5.7e-48 194.9 142 64.8
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 5.7e-48 194.9 125 71.2
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 7.5e-48 194.5 125 69.6
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 9.7e-48 194.1 125 74.4
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 2.2e-47 193.0 145 64.1
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 3.7e-47 192.2 126 69.0
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 4.8e-47 191.8 130 66.2
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 8.3e-47 191.0 114 80.7
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 9.1e-46 187.6 111 76.6
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 9.1e-46 187.6 134 65.7
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 4.5e-45 185.3 125 74.4
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 4.5e-45 185.3 157 58.6
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.9e-43 179.9 163 56.4
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 2.3e-41 172.9 116 69.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 3.0e-41 172.6 118 68.6
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 8.8e-41 171.0 123 63.4
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.2e-40 170.6 116 67.2
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.5e-40 170.2 104 76.9
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.4e-40 168.7 188 51.6
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 5.7e-40 168.3 115 63.5
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 7.5e-40 167.9 139 60.4
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 7.5e-40 167.9 139 60.4
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.3e-39 167.2 104 76.0
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.1e-38 164.1 104 72.1
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 3.1e-38 162.5 181 49.2
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 9.1e-38 161.0 120 59.2
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.6e-37 160.2 172 55.2
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 1.3e-36 157.1 123 61.0
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 1.5e-35 153.7 112 64.3
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 3.3e-35 152.5 104 69.2
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 4.2e-35 152.1 143 54.5
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 4.7e-34 148.7 116 60.3
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 8.9e-33 144.4 118 59.3
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 2.6e-32 142.9 86 74.4
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.7e-29 132.9 142 49.3
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 2.9e-28 129.4 100 63.0
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 8.6e-28 127.9 100 62.0
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.9e-27 126.7 100 62.0
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 2.5e-27 126.3 82 69.5
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.8e-26 122.9 80 70.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.8e-25 120.2 113 48.7
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 5.2e-25 118.6 81 67.9
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 6.8e-25 118.2 149 44.3
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.0e-24 116.7 75 68.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.6e-24 116.3 99 58.6
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 2.6e-24 116.3 84 61.9
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 5.8e-24 115.2 68 77.9
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 4.9e-23 112.1 90 61.1
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.9e-23 112.1 90 61.1
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.2e-21 107.5 85 62.4
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 3.9e-20 102.4 80 55.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 4.7e-18 95.5 61 72.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 8.1e-18 94.7 64 68.8
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.1e-17 92.8 78 55.1
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.4e-14 84.0 79 55.7
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 1.0e-12 77.8 68 52.9
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 6.6e-12 75.1 54 61.1
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 6.2e-10 68.6 97 40.2
Glyma.19G005502 Glycine max HOM05D005182 ORTHO05D006631 8.4e-07 58.2 65 53.8
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 9.2e-06 54.7 43 55.8


User provided reference genes

Program Settings