Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33449 Davidia involucrata HOM05D007358 ORTHO05D009117 2.4e-50 204.1 97 100.0
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 2.2e-35 154.5 97 76.3
Hma1.2p1_0013F.1_g008840 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 2.2e-35 154.5 97 76.3
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 1.2e-33 148.7 99 66.7
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 1.3e-32 145.2 97 67.0
FAN04G0278 Fragaria x ananassa HOM05D007358 ORTHO05D009117 2.5e-31 141.0 99 61.6
FAN04G1709 Fragaria x ananassa HOM05D007358 ORTHO05D009117 2.5e-31 141.0 99 61.6
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 4.3e-31 140.2 95 63.2
Lj2C1075G10 Lonicera japonica HOM05D007358 ORTHO05D009117 1.6e-30 138.3 95 68.4
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 2.1e-30 137.9 97 63.9
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 6.2e-30 136.3 99 60.6
vmacro05457 Vaccinium macrocarpon HOM05D007358 ORTHO05D009117 8.0e-30 136.0 94 67.0
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 1.8e-29 134.8 97 62.9
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 3.1e-29 134.0 97 59.8
CANSAT64G1792 Cannabis sativa HOM05D007358 ORTHO05D009117 8.9e-29 132.5 89 65.2
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 8.9e-29 132.5 97 58.8
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.5e-28 131.7 96 58.3
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 1.5e-28 131.7 91 65.9
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 2.0e-28 131.3 99 57.6
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 7.5e-28 129.4 97 59.8
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 2.9e-27 127.5 84 72.6
Ca_04155_v3 Cicer arietinum L. HOM05D007358 ORTHO05D009117 3.7e-27 127.1 97 59.8
Haze_14729 Corylus avellana HOM05D007358 ORTHO05D009117 4.9e-27 126.7 79 73.4
Cfa007380 Carpinus fangiana HOM05D007358 ORTHO05D009117 6.4e-27 126.3 79 73.4
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 8.3e-27 125.9 98 57.1
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 1.1e-26 125.6 98 57.1
CSS0000420 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 7.1e-26 122.9 79 74.7
Oeu037939.3 Olea europaea HOM05D007358 ORTHO05D009117 7.1e-26 122.9 94 57.4
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 1.6e-25 121.7 99 55.6
QL06p022929 Quercus lobata HOM05D007358 ORTHO05D009117 2.1e-25 121.3 85 62.4
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 2.7e-25 120.9 97 55.7
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 4.6e-25 120.2 98 52.0
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 4.6e-25 120.2 94 55.3
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 4.6e-25 120.2 97 53.6
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 1.0e-24 119.0 96 56.2
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 1.0e-24 119.0 98 54.1
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 1.3e-24 118.6 97 55.7
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 3.0e-24 117.5 106 59.4
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 5.1e-24 116.7 101 48.5
MBI17_g07976_MAGBIO Magnolia biondii HOM05D007358 ORTHO05D009117 8.6e-24 115.9 97 58.8
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 1.1e-23 115.5 96 57.3
Prupe.3G290200 Prunus persica HOM05D007358 ORTHO05D009117 1.1e-23 115.5 81 61.7
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 1.5e-23 115.2 97 53.6
Actinidia06003 Actinidia chinensis HOM05D007358 ORTHO05D009117 1.9e-23 114.8 71 77.5
Manes.17G021400 Manihot esculenta HOM05D007358 ORTHO05D009117 2.5e-23 114.4 88 56.8
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 3.3e-23 114.0 96 54.2
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 3.3e-23 114.0 96 54.2
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 4.3e-23 113.6 101 48.5
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 4.3e-23 113.6 90 57.8
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.6e-23 113.2 101 46.5
AUR62023937 Chenopodium quinoa HOM05D007358 ORTHO05D009117 9.5e-23 112.5 79 60.8
DCAR_000707 Daucus carota HOM05D007358 ORTHO05D009117 9.5e-23 112.5 93 55.9
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 3.6e-22 110.5 93 51.6
CiPaw.03G042400 Carya illinoinensis HOM05D007358 ORTHO05D009117 4.7e-22 110.2 79 60.8
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 6.2e-22 109.8 101 45.5
Atru.BG.30.p Acer truncatum HOM05D007358 ORTHO05D009117 1.1e-21 109.0 79 64.6
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.1e-21 109.0 101 44.6
Phvul.004G009641 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.4e-21 108.6 101 44.6
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.4e-21 108.6 101 44.6
Ah.01g004590 Amaranthus hybridus HOM05D007358 ORTHO05D009117 4.0e-21 107.1 75 65.3
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 4.0e-21 107.1 96 54.2
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.2e-21 106.7 101 44.6
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 5.2e-21 106.7 79 58.2
Nitab4.5_0000080g0200 Nicotiana tabacum HOM05D007358 ORTHO05D009117 6.8e-21 106.3 79 59.5
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 8.9e-21 105.9 79 60.8
Nitab4.5_0004652g0010 Nicotiana tabacum HOM05D007358 ORTHO05D009117 8.9e-21 105.9 79 59.5
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 1.2e-20 105.5 96 53.1
Rhsim11G0131500 Rhododendron simsii HOM05D007358 ORTHO05D009117 3.4e-20 104.0 72 69.4
PGSC0003DMG400009102 Solanum tuberosum HOM05D007358 ORTHO05D009117 4.4e-20 103.6 79 59.5
Sc03g0011070 Simmondsia chinensis HOM05D007358 ORTHO05D009117 5.8e-20 103.2 75 65.3
Sopen03g003350 Solanum pennellii HOM05D007358 ORTHO05D009117 5.8e-20 103.2 79 58.2
QL02p074974 Quercus lobata HOM05D007358 ORTHO05D009117 7.6e-20 102.8 80 62.5
EL10Ac9g21083 Beta vulgaris HOM05D007358 ORTHO05D009117 1.3e-19 102.1 71 66.2
Solyc03g007390.4 Solanum lycopersicum HOM05D007358 ORTHO05D009117 1.7e-19 101.7 79 57.0
CAN.G108.28 Capsicum annuum HOM05D007358 ORTHO05D009117 2.9e-19 100.9 80 58.8
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 2.9e-19 100.9 78 57.7
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 4.9e-19 100.1 97 46.4
Hund17802 Selenicereus undatus HOM05D007358 ORTHO05D009117 6.4e-19 99.8 75 62.7
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 3.2e-18 97.4 97 45.4
QL02p075081 Quercus lobata HOM05D007358 ORTHO05D009117 5.4e-18 96.7 69 63.8
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 9.2e-18 95.9 76 55.3
Nn2g12649 Nelumbo nucifera HOM05D007358 ORTHO05D009117 3.5e-17 94.0 79 53.2
Gohir.D11G070700 Gossypium hirsutum HOM05D007358 ORTHO05D009117 1.0e-16 92.4 77 50.6
Gorai.007G075800 Gossypium raimondii HOM05D007358 ORTHO05D009117 1.0e-16 92.4 77 50.6
Thecc.04G015800 Theobroma cacao HOM05D007358 ORTHO05D009117 1.3e-16 92.0 77 53.2
Gohir.A11G066500 Gossypium hirsutum HOM05D007358 ORTHO05D009117 3.9e-16 90.5 76 51.3
BcaB06g27500 Brassica carinata HOM05D007358 ORTHO05D009117 4.3e-15 87.0 78 55.1
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 4.3e-15 87.0 79 48.1
AT5G40400 Arabidopsis thaliana HOM05D007358 ORTHO05D009117 2.8e-14 84.3 76 55.3
Carub.0007s3520 Capsella rubella HOM05D007358 ORTHO05D009117 1.1e-13 82.4 79 53.2
AL7G49460 Arabidopsis lyrata HOM05D007358 ORTHO05D009117 2.4e-13 81.3 76 53.9
CDE04G1234 Ceratophyllum demersum HOM05D007358 ORTHO05D009117 4.0e-13 80.5 81 44.4
Thhalv10027688m.g Eutrema salsugineum HOM05D007358 ORTHO05D009117 6.8e-13 79.7 76 52.6
Sp7g01520 Schrenkiella parvula HOM05D007358 ORTHO05D009117 8.9e-13 79.3 81 51.9
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 6.4e-11 73.2 77 39.0
HPP92_024515 Vanilla planifolia HOM05D000740 ORTHO05D003236 1.4e-10 72.0 84 40.5
HPP92_024586 Vanilla planifolia HOM05D007358 ORTHO05D009117 1.4e-10 72.0 84 40.5
Peaxi162Scf00566g00064 Petunia axillaris HOM05D007358 ORTHO05D009117 1.2e-09 68.9 47 61.7
Rhsim10G0018200 Rhododendron simsii HOM05D007358 ORTHO05D009117 2.7e-09 67.8 50 58.0
GSVIVG01037263001 Vitis vinifera HOM05D007455 ORTHO05D009431 6.0e-09 66.6 79 36.7
ATR0829G035 Amborella trichopoda HOM05D007455 ORTHO05D009431 2.3e-08 64.7 79 34.2
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 3.0e-08 64.3 77 33.8
CSS0022782 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 1.1e-07 62.4 79 34.2
Dinv36177 Davidia involucrata HOM05D007455 ORTHO05D009431 1.5e-07 62.0 87 31.0
SEGI_14415 Sequoiadendron giganteum HOM05D006931 ORTHO05D009509 1.5e-07 62.0 61 39.3
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.9e-07 61.6 77 28.6
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 2.5e-07 61.2 73 34.2
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 5.6e-07 60.1 69 37.7
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 7.3e-07 59.7 97 34.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 7.3e-07 59.7 93 33.3
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 7.3e-07 59.7 79 32.9
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 7.3e-07 59.7 78 32.1
CiPaw.13G151600 Carya illinoinensis HOM05D007455 ORTHO05D009431 9.6e-07 59.3 79 35.4
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 9.6e-07 59.3 79 32.9
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 1.3e-06 58.9 79 32.9
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.3e-06 58.9 82 32.9
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 1.3e-06 58.9 79 32.9
Ca_06217_v3 Cicer arietinum L. HOM05D007455 ORTHO05D009431 1.6e-06 58.5 70 37.1
PSO384G2302 Papaver somniferum HOM05D007455 ORTHO05D009431 2.1e-06 58.2 66 37.9
Solyc04g079850.2 Solanum lycopersicum HOM05D007639 ORTHO05D009509 2.1e-06 58.2 79 38.0
Atru.chr3.2773 Acer truncatum HOM05D007455 ORTHO05D009431 2.8e-06 57.8 79 34.2
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 2.8e-06 57.8 90 34.4
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.8e-06 57.8 87 32.2
Cpa.g.sc84.2 Carica papaya HOM05D007455 ORTHO05D009431 3.6e-06 57.4 77 31.2
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 3.6e-06 57.4 79 39.2
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 3.6e-06 57.4 66 36.4
RcHm_v2.0_Chr5g0050671 Rosa chinensis HOM05D007455 ORTHO05D009431 3.6e-06 57.4 79 31.6
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 3.6e-06 57.4 94 33.0
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 4.8e-06 57.0 78 33.3
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 4.8e-06 57.0 79 32.9
THA.LOC104811670 Tarenaya hassleriana HOM05D007390 ORTHO05D009114 4.8e-06 57.0 90 35.6
Phvul.008G200500 Phaseolus vulgaris HOM05D007455 ORTHO05D009431 6.2e-06 56.6 69 33.3
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 6.2e-06 56.6 81 32.1
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 6.2e-06 56.6 81 39.5
BcaB08g35953 Brassica carinata HOM05D007390 ORTHO05D009114 8.1e-06 56.2 96 36.5
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 8.1e-06 56.2 82 35.4
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 8.1e-06 56.2 92 33.7
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 8.1e-06 56.2 82 37.8
Sopen04g033420 Solanum pennellii HOM05D007639 ORTHO05D009509 8.1e-06 56.2 79 36.7
TAR636G1848 Trochodendron aralioides HOM05D007455 ORTHO05D009431 8.1e-06 56.2 73 32.9


User provided reference genes

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