Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33388 Davidia involucrata HOM05D001177 ORTHO05D007091 1.7e-120 436.0 226 100.0
Dinv00599 Davidia involucrata HOM05D001177 ORTHO05D007091 4.4e-92 341.7 181 97.2
Actinidia36159 Actinidia chinensis HOM05D001177 ORTHO05D007091 2.5e-58 229.6 181 68.0
Haze_14808 Corylus avellana HOM05D001177 ORTHO05D007091 4.2e-58 228.8 181 68.0
CiPaw.04G032700 Carya illinoinensis HOM05D001177 ORTHO05D007091 7.9e-57 224.6 183 66.7
QL02p073037 Quercus lobata HOM05D001177 ORTHO05D007091 6.7e-56 221.5 180 67.2
QL02p073106 Quercus lobata HOM05D001177 ORTHO05D007091 6.7e-56 221.5 180 67.2
Potri.001G336832 Populus trichocarpa HOM05D001177 ORTHO05D007091 1.5e-55 220.3 183 62.3
Thecc.04G027000 Theobroma cacao HOM05D001177 ORTHO05D007091 5.7e-55 218.4 182 63.2
COL.COLO4_29271 Corchorus olitorius HOM05D001177 ORTHO05D007091 4.8e-54 215.3 182 61.0
Sabra16G0217700 Salix brachista HOM05D001177 ORTHO05D007091 1.4e-53 213.8 183 60.7
Cpa.g.sc1097.2 Carica papaya HOM05D001177 ORTHO05D007091 9.0e-53 211.1 183 62.3
Atru.chr6.2479 Acer truncatum HOM05D001177 ORTHO05D007091 1.5e-52 210.3 188 62.8
Lsat_1_v5_gn_4_183800 Lactuca sativa HOM05D001177 ORTHO05D007091 1.0e-51 207.6 178 62.9
GSVIVG01003965001 Vitis vinifera HOM05D001177 ORTHO05D001507 3.8e-51 205.7 187 61.5
Manes.01G014100 Manihot esculenta HOM05D001177 ORTHO05D007091 5.0e-51 205.3 182 58.8
Nitab4.5_0001863g0200 Nicotiana tabacum HOM05D001177 ORTHO05D007091 6.5e-51 204.9 212 57.5
Rhsim10G0011600 Rhododendron simsii HOM05D001177 ORTHO05D007091 1.1e-50 204.1 187 61.0
Ciclev10017544m.g Citrus clementina HOM05D001177 ORTHO05D001507 1.4e-50 203.8 203 57.1
Nitab4.5_0001031g0080 Nicotiana tabacum HOM05D001177 ORTHO05D007091 1.4e-50 203.8 212 57.1
vmacro05919 Vaccinium macrocarpon HOM05D001177 ORTHO05D007091 2.5e-50 203.0 151 72.8
Peaxi162Scf00420g00254 Petunia axillaris HOM05D001177 ORTHO05D007091 5.5e-50 201.8 216 54.6
MD17G1018600 Malus domestica HOM05D001177 ORTHO05D007091 9.3e-50 201.1 187 62.0
Duzib187G1086 Durio zibethinus HOM05D001177 ORTHO05D007091 1.2e-49 200.7 185 61.1
Manes.01G049405 Manihot esculenta HOM05D001177 ORTHO05D007091 1.2e-49 200.7 183 57.4
Lju41A46T90 Lonicera japonica HOM05D001177 ORTHO05D007091 1.6e-49 200.3 182 62.1
Eucgr.I01697 Eucalyptus grandis HOM05D001177 ORTHO05D001507 2.1e-49 199.9 192 55.7
TWI12G0650 Tripterygium wilfordii HOM05D001177 ORTHO05D007091 3.5e-49 199.1 181 64.1
RcHm_v2.0_Chr2g0174111 Rosa chinensis HOM05D001177 ORTHO05D007091 7.9e-49 198.0 187 61.5
Duzib147G1186 Durio zibethinus HOM05D001177 ORTHO05D007091 1.3e-48 197.2 183 58.5
Prupe.3G299100 Prunus persica HOM05D001177 ORTHO05D001507 1.3e-48 197.2 164 65.2
arahy.Tifrunner.gnm1.ann1.Q0SVNI Arachis hypogaea HOM05D001177 ORTHO05D007091 3.9e-48 195.7 184 59.8
PGSC0003DMG400006969 Solanum tuberosum HOM05D001177 ORTHO05D007091 8.7e-48 194.5 182 61.0
PGR083G2095 Punica granatum HOM05D001177 ORTHO05D007091 1.9e-47 193.4 186 56.5
Gohir.D11G069600 Gossypium hirsutum HOM05D001177 ORTHO05D007091 4.3e-47 192.2 196 54.1
MD09G1017800 Malus domestica HOM05D001177 ORTHO05D007091 4.3e-47 192.2 187 62.0
SGA_v2.0_scaffold135G34937 Striga asiatica HOM05D001177 ORTHO05D007091 4.3e-47 192.2 166 63.3
Gorai.007G074400 Gossypium raimondii HOM05D001177 ORTHO05D007091 9.7e-47 191.0 196 54.1
Oeu048591.1 Olea europaea HOM05D001177 ORTHO05D007091 9.7e-47 191.0 141 70.9
CSS0005984 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 1.6e-46 190.3 185 58.9
CSS0031107 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 1.6e-46 190.3 185 58.9
arahy.Tifrunner.gnm1.ann1.R689L2 Arachis hypogaea HOM05D001177 ORTHO05D007091 3.7e-46 189.1 184 59.8
Gohir.A11G065300 Gossypium hirsutum HOM05D001177 ORTHO05D007091 6.3e-46 188.3 182 55.5
Nn3g16573 Nelumbo nucifera HOM05D001177 ORTHO05D007091 6.3e-46 188.3 177 58.8
Sopen02g017100 Solanum pennellii HOM05D001177 ORTHO05D007091 1.1e-45 187.6 182 59.3
Cc08_g11710 Coffea canephora HOM05D001177 ORTHO05D007091 1.8e-45 186.8 187 57.8
Solyc02g067970.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 2.4e-45 186.4 184 58.2
Migut.H00054 Erythranthe guttata HOM05D001177 ORTHO05D007091 1.2e-44 184.1 182 57.7
HanXRQChr09g0255621 Helianthus annuus HOM05D001177 ORTHO05D007091 1.0e-43 181.0 182 56.6
Manes.S095224 Manihot esculenta HOM05D001177 ORTHO05D007091 3.8e-43 179.1 141 63.8
PGSC0003DMG400020230 Solanum tuberosum HOM05D001177 ORTHO05D007091 8.5e-43 177.9 190 53.7
CANSAT64G1259 Cannabis sativa HOM05D001177 ORTHO05D007091 1.1e-42 177.6 183 53.6
ECA232G2553 Erigeron canadensis HOM05D001177 ORTHO05D007091 1.4e-42 177.2 165 61.8
Solyc02g093760.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 1.4e-42 177.2 189 54.0
Lalb_Chr14g0363031 Lupinus albus HOM05D001177 ORTHO05D007091 7.2e-42 174.9 185 57.3
FAN02G2178 Fragaria x ananassa HOM05D001177 ORTHO05D007091 3.6e-41 172.6 208 51.4
Sed0005287 Sechium edule HOM05D001177 ORTHO05D007091 8.8e-40 167.9 181 55.2
TPR.G9071 Trifolium pratense HOM05D001177 ORTHO05D007091 2.0e-39 166.8 179 50.8
Glyma.16G063400 Glycine max HOM05D001177 ORTHO05D007091 7.4e-39 164.9 191 50.8
Medtr7g035445 Medicago truncatula HOM05D001177 ORTHO05D007091 1.7e-38 163.7 182 53.8
Sed0019906 Sechium edule HOM05D001177 ORTHO05D007091 3.7e-38 162.5 163 58.3
CsaV3_3G027350 Cucumis sativus L. HOM05D001177 ORTHO05D007091 1.8e-37 160.2 152 59.2
DCAR_002963 Daucus carota HOM05D001177 ORTHO05D007091 5.3e-37 158.7 161 58.4
Psat3g169040 Pisum sativum HOM05D001177 ORTHO05D007091 5.3e-37 158.7 157 56.7
ClCG05G013200 Citrullus lanatus HOM05D001177 ORTHO05D007091 2.0e-36 156.8 156 55.1
Aqoxy5G03563 Aquilegia oxysepala HOM05D001177 ORTHO05D007091 2.6e-36 156.4 232 42.2
Glyma.19G082000 Glycine max HOM05D001177 ORTHO05D007091 2.9e-35 152.9 191 48.2
FAN09G0779 Fragaria x ananassa HOM05D001177 ORTHO05D007091 8.5e-35 151.4 154 55.8
FAN09G4850 Fragaria x ananassa HOM05D001177 ORTHO05D007091 8.5e-35 151.4 154 55.8
Ca_06569_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 1.1e-34 151.0 182 50.0
THA.LOC104805349 Tarenaya hassleriana HOM05D001177 ORTHO05D007091 1.1e-34 151.0 169 50.3
Nitab4.5_0005414g0040 Nicotiana tabacum HOM05D001177 ORTHO05D007091 1.4e-34 150.6 181 49.7
AUR62005578 Chenopodium quinoa HOM05D001177 ORTHO05D007091 3.2e-34 149.4 150 55.3
TAR446G0002 Trochodendron aralioides HOM05D001177 ORTHO05D007091 4.2e-34 149.1 186 47.8
Sopen02g038400 Solanum pennellii HOM05D001177 ORTHO05D007091 7.2e-34 148.3 189 48.7
Nitab4.5_0000040g0530 Nicotiana tabacum HOM05D001177 ORTHO05D007091 9.4e-34 147.9 184 49.5
MELO3C014848.2 Cucumis melo HOM05D001177 ORTHO05D007091 1.2e-33 147.5 153 55.6
TAR371G1081 Trochodendron aralioides HOM05D001177 ORTHO05D007091 6.1e-33 145.2 182 48.4
CDE07G0753 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 1.8e-32 143.7 163 50.9
AUR62024152 Chenopodium quinoa HOM05D001177 ORTHO05D007091 1.8e-32 143.7 156 53.2
Nn4g22453 Nelumbo nucifera HOM05D001177 ORTHO05D007091 1.5e-31 140.6 177 45.8
Phvul.008G148200 Phaseolus vulgaris HOM05D001177 ORTHO05D007091 2.6e-31 139.8 188 46.8
FAN05G3425 Fragaria x ananassa HOM05D001177 ORTHO05D007091 4.4e-31 139.0 206 46.6
FAN14G2882 Fragaria x ananassa HOM05D001177 ORTHO05D007091 4.8e-30 135.6 208 44.7
Lj1g0014156 Lotus japonicus HOM05D001177 ORTHO05D007091 1.1e-29 134.4 167 43.7
Gohir.A09G032700 Gossypium hirsutum HOM05D001177 ORTHO05D007091 1.2e-28 131.0 183 44.8
SHI03853 Sapria himalayana HOM05D001177 ORTHO05D007091 1.2e-28 131.0 178 47.8
EL10Ac6g13445 Beta vulgaris HOM05D001177 ORTHO05D007091 5.9e-28 128.6 153 49.0
Ah.02g130620 Amaranthus hybridus HOM05D001177 ORTHO05D007091 1.0e-27 127.9 150 51.3
Gorai.006G037700 Gossypium raimondii HOM05D001177 ORTHO05D007091 1.3e-27 127.5 183 44.3
PSO384G2778 Papaver somniferum HOM05D001177 ORTHO05D007091 6.5e-27 125.2 184 47.3
FvH4_6g52470 Fragaria vesca HOM05D001177 ORTHO05D007091 9.4e-26 121.3 184 44.0
PSO017G0460 Papaver somniferum HOM05D001177 ORTHO05D007091 6.1e-25 118.6 184 46.7
ATR0824G077 Amborella trichopoda HOM05D001177 ORTHO05D007091 6.7e-24 115.2 158 46.2
CARHR148650 Cardamine hirsuta HOM05D001177 ORTHO05D001507 8.8e-24 114.8 186 40.9
Aa31LG2G5370 Aethionema arabicum HOM05D001177 ORTHO05D001507 5.7e-23 112.1 192 41.1
Carub.0005s0563 Capsella rubella HOM05D001177 ORTHO05D001507 5.7e-23 112.1 191 39.8
Sc03g0007010 Simmondsia chinensis HOM05D001177 ORTHO05D007091 1.3e-22 110.9 163 43.6
Sc03g0006890 Simmondsia chinensis HOM05D001177 ORTHO05D007091 1.7e-22 110.5 164 43.3
Sp2g16520 Schrenkiella parvula HOM05D001177 ORTHO05D001507 5.3e-21 105.5 160 43.8
Hund24909 Selenicereus undatus HOM05D001177 ORTHO05D007091 5.3e-21 105.5 143 49.0
Thhalv10003629m.g Eutrema salsugineum HOM05D001177 ORTHO05D001507 7.0e-21 105.1 212 34.0
Cfa007285 Carpinus fangiana HOM05D001177 ORTHO05D007091 9.1e-21 104.8 97 60.8
AT3G27330 Arabidopsis thaliana HOM05D001177 ORTHO05D001507 1.0e-19 101.3 166 38.6
PSO063G4178 Papaver somniferum HOM05D001177 ORTHO05D007091 5.0e-19 99.0 252 34.9
AL5G16650 Arabidopsis lyrata HOM05D001177 ORTHO05D001507 8.5e-19 98.2 198 34.3
BolC2t11472H Brassica oleracea HOM05D001177 ORTHO05D001507 4.2e-18 95.9 174 37.9
C02p54100 Brassica napus HOM05D001177 ORTHO05D001507 1.6e-17 94.0 191 35.6
CDE04G1204 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 1.4e-16 90.9 86 57.0
MBI11_g40895_MAGBIO Magnolia biondii HOM05D001177 ORTHO05D007091 1.8e-16 90.5 106 50.0
Zm00001eb331370 Zea mays HOM05D001177 ORTHO05D007091 1.8e-16 90.5 181 35.9
SEGI_15562 Sequoiadendron giganteum HOM05D001177 ORTHO05D007091 4.4e-15 85.9 235 32.3
A02p35380 Brassica napus HOM05D001177 ORTHO05D007091 9.8e-15 84.7 171 36.3
Nn6g31539 Nelumbo nucifera HOM05D001177 ORTHO05D007091 6.3e-14 82.0 131 42.0
PSO339G1540 Papaver somniferum HOM05D001177 ORTHO05D007091 1.1e-13 81.3 182 39.0
Mapoly0006s0009 Marchantia polymorpha HOM05D001177 ORTHO05D007091 3.1e-13 79.7 200 33.0
Os12g0267900 Oryza sativa ssp. japonica HOM05D001177 ORTHO05D007091 7.0e-13 78.6 151 35.8
Pp3c9_11850 Physcomitrium patens HOM05D001177 ORTHO05D007091 1.6e-12 77.4 207 33.8
Pp3c9_11853 Physcomitrium patens HOM05D001177 ORTHO05D007091 1.6e-12 77.4 207 33.8
HPP92_004597 Vanilla planifolia HOM05D001177 ORTHO05D007091 2.0e-12 77.0 101 48.5
Peaxi162Scf00080g01722 Petunia axillaris HOM05D001177 ORTHO05D007091 5.9e-12 75.5 64 60.9
Nitab4.5_0001544g0170 Nicotiana tabacum HOM05D001177 ORTHO05D007091 1.5e-10 70.9 81 51.9
Thecc.04G025000 Theobroma cacao HOM05D001177 ORTHO05D007091 1.9e-10 70.5 66 56.1
HPP92_004596 Vanilla planifolia HOM05D001177 ORTHO05D007091 1.9e-10 70.5 34 82.4
BcaC03g14536 Brassica carinata HOM05D001177 ORTHO05D007091 2.1e-09 67.0 37 67.6
C07p39030 Brassica napus HOM05D001177 ORTHO05D007091 2.1e-09 67.0 37 67.6
C08p08490 Brassica napus HOM05D000546 ORTHO05D000398 2.1e-09 67.0 37 67.6
C08p35970 Brassica napus HOM05D001177 ORTHO05D007091 1.0e-08 64.7 36 66.7
C09p60530 Brassica napus HOM05D001177 ORTHO05D007091 1.0e-08 64.7 36 66.7
MD05G1086500 Malus domestica HOM05D001177 ORTHO05D007091 1.4e-08 64.3 47 63.8
Medtr7g035455 Medicago truncatula HOM05D001177 ORTHO05D007091 5.2e-08 62.4 37 64.9
CBR_g51805 Chara braunii HOM05D001177 ORTHO05D007091 9.8e-07 58.2 69 44.9
Zm00001eb111820 Zea mays HOM05D001177 ORTHO05D007091 9.8e-07 58.2 188 30.3
Ca_11723_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 1.7e-06 57.4 45 60.0


User provided reference genes

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