Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 2.1e-258 895.2 449 100.0
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 8.2e-215 750.4 410 92.4
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 2.0e-200 702.6 409 85.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.0e-185 653.7 429 76.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 1.3e-180 636.7 415 76.6
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 2.8e-178 629.0 420 73.8
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.0e-177 627.1 410 76.1
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.5e-176 623.2 383 79.1
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 2.0e-176 622.9 451 69.6
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 7.5e-176 620.9 407 75.7
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 3.2e-174 615.5 414 74.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 2.3e-172 609.4 403 75.7
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 2.3e-172 609.4 455 68.4
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 6.6e-172 607.8 424 71.7
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 6.6e-172 607.8 422 71.1
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 3.3e-171 605.5 445 68.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 6.2e-170 601.3 398 73.9
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 2.0e-168 596.3 436 68.6
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.0e-168 596.3 422 70.9
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 1.3e-167 593.6 421 69.8
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 1.7e-167 593.2 410 71.0
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 3.7e-167 592.0 445 67.2
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 8.3e-167 590.9 410 71.5
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 4.1e-166 588.6 416 71.4
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 5.4e-166 588.2 408 71.1
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 7.0e-166 587.8 445 66.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 7.0e-166 587.8 409 69.7
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 2.1e-165 586.3 408 71.3
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 3.5e-165 585.5 423 70.0
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 4.6e-165 585.1 426 68.5
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 6.0e-165 584.7 445 66.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.9e-164 582.0 394 72.3
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 1.1e-163 580.5 411 71.0
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 1.9e-163 579.7 406 69.5
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 1.9e-163 579.7 422 69.7
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 2.5e-163 579.3 447 65.3
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 3.3e-163 578.9 410 69.0
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 5.6e-163 578.2 439 66.5
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 7.3e-163 577.8 411 70.1
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 1.2e-162 577.0 410 70.0
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 1.6e-162 576.6 410 69.5
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 3.6e-162 575.5 430 66.5
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 8.1e-162 574.3 399 72.2
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 8.1e-162 574.3 410 68.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 1.1e-161 573.9 445 64.7
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.1e-161 573.9 399 71.9
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 3.1e-161 572.4 446 64.6
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.0e-160 569.7 399 71.7
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 2.0e-160 569.7 412 70.1
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 2.6e-160 569.3 408 68.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 2.6e-160 569.3 446 63.9
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 4.4e-160 568.5 445 64.3
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 1.3e-159 567.0 422 67.1
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 6.4e-159 564.7 411 68.9
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 6.4e-159 564.7 409 68.9
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 1.1e-158 563.9 411 68.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.4e-158 563.5 411 69.1
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.9e-158 563.1 411 68.6
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 2.1e-157 559.7 411 68.4
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 4.6e-157 558.5 445 64.5
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 7.8e-157 557.8 400 68.5
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 1.1e-155 553.9 422 65.6
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 4.3e-155 552.0 489 58.3
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 1.2e-154 550.4 433 63.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 2.4e-153 546.2 433 63.3
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 5.2e-153 545.0 445 63.1
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 5.8e-152 541.6 397 67.3
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 2.2e-151 539.7 400 67.5
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 4.9e-151 538.5 424 65.3
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 1.4e-150 537.0 394 67.3
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 2.4e-150 536.2 407 67.3
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 3.2e-150 535.8 423 65.2
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 9.2e-150 534.3 410 65.4
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 2.1e-149 533.1 400 66.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 3.5e-149 532.3 397 66.5
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 4.6e-149 531.9 401 66.8
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 2.3e-148 529.6 423 62.9
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 3.0e-148 529.3 410 65.6
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 3.0e-148 529.3 435 63.9
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 8.7e-148 527.7 404 66.3
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 1.1e-147 527.3 405 66.2
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 1.1e-147 527.3 398 65.8
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 1.5e-147 526.9 406 66.0
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 1.9e-147 526.6 411 65.2
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 3.3e-147 525.8 419 64.4
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 3.3e-147 525.8 419 64.4
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 4.3e-147 525.4 423 64.5
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 4.3e-147 525.4 398 67.3
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 2.8e-146 522.7 398 63.8
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 4.0e-145 518.8 404 66.6
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 5.3e-145 518.5 451 59.6
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 1.5e-144 516.9 405 64.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 2.0e-144 516.5 386 65.8
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 2.6e-144 516.2 412 63.8
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 2.6e-144 516.2 403 64.3
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 4.4e-144 515.4 445 62.5
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 2.9e-143 512.7 445 59.6
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.4e-142 510.4 384 67.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.9e-142 510.0 391 64.7
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 5.4e-142 508.4 459 57.3
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 2.3e-140 503.1 443 60.5
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.6e-139 497.7 535 51.4
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 2.2e-135 486.5 421 59.6
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 4.9e-135 485.3 404 60.6
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 6.4e-135 485.0 420 59.3
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.8e-130 468.8 358 65.6
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 4.0e-129 465.7 424 59.4
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.8e-121 440.3 405 59.5
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 5.8e-120 435.3 431 54.5
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 7.9e-117 424.9 325 65.5
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.8e-108 397.1 363 57.9
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.3e-108 396.7 391 52.9
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 6.3e-106 388.7 426 48.6
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-105 387.9 395 51.4
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 7.9e-101 371.7 229 78.2
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 2.3e-100 370.2 292 64.4
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 4.1e-97 359.4 232 74.6
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 7.0e-97 358.6 232 75.0
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.6e-96 356.7 234 76.1
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.5e-86 324.3 232 69.0
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.7e-85 320.1 209 76.1
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.5e-83 314.3 358 50.0
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 4.9e-66 256.1 390 38.5
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.3e-63 248.1 210 59.5
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.9e-41 174.5 386 32.1
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 3.9e-31 140.2 144 50.0
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.1e-30 138.7 102 66.7
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 3.4e-27 127.1 345 31.3
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 2.7e-16 90.9 58 63.8
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.8e-13 80.9 275 29.1
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.8e-10 70.5 78 51.3


User provided reference genes

Program Settings