Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 3.7e-235 817.8 395 100.0
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 3.9e-168 595.1 395 73.7
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 6.2e-166 587.8 393 73.8
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 6.2e-166 587.8 406 71.4
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 9.9e-164 580.5 382 75.1
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 8.4e-163 577.4 383 74.4
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 2.4e-162 575.9 390 71.0
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 9.3e-162 573.9 405 70.6
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.6e-161 573.2 394 70.3
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.6e-161 573.2 394 70.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 2.1e-161 572.8 396 72.0
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 7.8e-161 570.9 394 70.3
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.7e-160 569.7 395 71.1
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 2.3e-160 569.3 394 71.8
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.0e-160 568.9 394 70.8
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 6.6e-160 567.8 390 69.7
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 8.7e-160 567.4 399 71.2
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.9e-159 566.2 409 69.9
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.5e-159 565.8 394 69.5
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 3.3e-159 565.5 407 68.8
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.3e-159 565.1 406 70.2
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 9.6e-159 563.9 394 70.8
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.6e-158 562.0 409 69.2
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 6.2e-158 561.2 396 69.2
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 1.1e-157 560.5 396 69.2
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.1e-157 560.5 409 69.2
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.4e-157 559.3 394 69.3
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.4e-157 559.3 393 70.0
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 5.3e-157 558.1 379 72.3
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.2e-156 557.0 389 69.7
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.4e-156 555.4 418 65.8
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 5.8e-156 554.7 394 68.8
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 7.6e-156 554.3 392 68.9
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 2.9e-155 552.4 396 69.2
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 1.4e-154 550.1 396 68.7
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.9e-154 549.7 394 67.5
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.9e-154 549.7 394 67.5
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 2.4e-154 549.3 405 67.7
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 4.2e-154 548.5 394 69.3
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 2.1e-153 546.2 420 65.0
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 2.1e-153 546.2 394 68.0
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 2.7e-153 545.8 396 68.9
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 6.0e-153 544.7 394 67.8
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.0e-152 543.9 394 67.0
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.1e-152 541.6 394 66.8
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 5.1e-152 541.6 412 65.8
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 6.7e-152 541.2 396 66.7
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.5e-151 540.0 405 66.7
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 4.3e-151 538.5 393 67.4
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 5.6e-151 538.1 400 67.2
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 9.6e-151 537.3 393 68.7
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 1.3e-150 537.0 395 68.4
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.4e-149 533.5 390 66.2
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 1.4e-149 533.5 337 77.2
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 2.4e-149 532.7 417 63.3
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.4e-149 532.7 392 66.8
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 3.1e-149 532.3 417 64.3
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 3.1e-149 532.3 398 66.8
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 4.0e-149 531.9 412 65.5
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.0e-148 529.6 394 66.0
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 4.5e-148 528.5 337 75.7
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 2.2e-147 526.2 390 65.4
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.9e-147 525.8 388 65.7
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.9e-147 525.8 417 64.5
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 3.2e-146 522.3 378 68.3
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.2e-145 520.4 414 63.8
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 4.6e-145 518.5 393 64.4
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.5e-143 512.7 386 66.3
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 4.3e-143 511.9 390 64.1
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 2.1e-142 509.6 405 62.5
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.8e-142 509.2 387 65.9
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 6.2e-142 508.1 375 69.9
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 6.2e-142 508.1 390 62.8
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.4e-141 506.9 398 63.6
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 3.1e-141 505.8 385 63.6
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 5.3e-141 505.0 397 62.7
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 2.0e-140 503.1 383 63.7
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 2.6e-140 502.7 393 62.8
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.7e-139 500.0 390 62.6
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.2e-139 499.6 390 62.3
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 4.9e-139 498.4 389 64.3
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 6.5e-139 498.0 406 61.8
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 8.4e-139 497.7 337 73.9
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.4e-138 496.9 337 70.6
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 2.5e-138 496.1 400 60.5
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 3.2e-138 495.7 390 62.6
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 7.1e-138 494.6 406 60.6
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 1.6e-137 493.4 414 59.2
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 6.7e-136 488.0 379 63.3
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 3.3e-135 485.7 386 61.4
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 5.7e-135 485.0 378 62.2
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 2.8e-134 482.6 358 66.5
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 6.3e-134 481.5 378 61.6
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 6.9e-133 478.0 378 61.4
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 9.0e-133 477.6 410 57.8
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.2e-132 477.2 405 60.0
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 1.3e-131 473.8 337 69.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.8e-128 463.4 398 58.0
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 7.4e-127 458.0 396 57.8
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.2e-124 450.7 320 67.2
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 7.7e-124 448.0 319 68.3
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 6.5e-123 444.9 295 72.2
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 3.2e-122 442.6 295 72.2
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 2.2e-115 419.9 370 58.4
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 5.2e-112 408.7 318 63.2
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 2.6e-111 406.4 409 54.3
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 7.4e-111 404.8 394 53.6
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.8e-110 402.9 289 69.6
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.7e-107 393.7 287 69.3
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 4.0e-104 382.5 425 49.4
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 2.2e-102 376.7 319 61.8
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 2.2e-102 376.7 392 46.9
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 8.2e-102 374.8 296 62.8
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 7.2e-98 361.7 307 60.3
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 7.5e-95 351.7 242 72.7
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.9e-92 342.0 254 68.1
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 5.0e-83 312.4 410 40.2
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 4.0e-80 302.8 218 68.8
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.5e-76 289.7 389 41.1
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.5e-63 247.7 216 58.8
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.1e-61 238.8 155 73.5
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.6e-60 237.7 142 75.4
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.6e-60 237.7 208 58.7
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.6e-55 220.3 133 77.4
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 3.2e-53 213.4 159 64.2
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 1.4e-45 188.0 406 30.8
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 6.2e-41 172.6 267 44.2
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.5e-34 150.6 130 56.9
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.6e-25 121.3 85 71.8
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.2e-23 115.2 172 35.5
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.1e-20 104.4 97 51.5
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.7e-15 85.9 150 35.3
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.7e-14 84.7 79 53.2
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.5e-13 80.9 72 55.6
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.7e-09 68.2 66 50.0
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 5.9e-07 59.7 67 44.8


User provided reference genes

Program Settings