Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 3.8e-142 508.1 243 100.0
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.4e-64 250.4 207 65.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 9.7e-61 237.7 208 63.9
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 9.1e-59 231.1 206 59.7
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.5e-58 230.3 202 63.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.5e-58 228.8 207 63.3
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 7.7e-58 228.0 207 58.5
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.0e-57 227.6 211 57.8
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 8.5e-57 224.6 204 60.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.4e-56 223.8 204 61.8
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.5e-56 223.0 207 59.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 7.2e-56 221.5 207 58.9
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 7.2e-56 221.5 207 57.5
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.2e-55 220.7 207 58.5
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.2e-55 220.7 207 59.4
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.1e-55 219.9 202 59.4
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.7e-55 219.5 206 59.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 3.6e-55 219.2 208 56.2
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.6e-55 219.2 173 65.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.0e-54 216.1 183 61.7
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 3.9e-54 215.7 211 55.5
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.1e-53 214.2 207 58.5
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 3.3e-53 212.6 209 56.5
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.4e-53 212.2 207 55.6
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.4e-53 212.2 195 56.9
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 5.7e-53 211.8 207 57.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.3e-52 210.7 198 59.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.3e-52 210.7 207 55.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.3e-52 210.7 207 55.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.2e-52 209.9 256 48.8
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-52 209.5 212 55.7
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 3.7e-52 209.1 208 56.7
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 4.8e-52 208.8 207 56.5
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 6.3e-52 208.4 198 58.1
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 6.3e-52 208.4 229 52.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.1e-51 207.6 183 61.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.8e-51 206.8 207 55.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.1e-51 206.1 207 56.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.1e-51 206.1 170 62.9
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.1e-51 205.7 212 54.2
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 5.3e-51 205.3 177 61.0
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 5.3e-51 205.3 207 58.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.0e-51 204.9 207 53.6
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 9.1e-51 204.5 211 54.5
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.2e-50 204.1 170 62.4
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.6e-50 203.0 207 54.1
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.5e-50 202.6 184 58.7
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.5e-50 202.6 184 58.7
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.5e-50 202.6 177 62.1
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 4.5e-50 202.2 191 57.1
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.5e-50 202.2 166 62.7
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.0e-49 201.1 204 54.4
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.9e-49 199.5 208 54.8
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 3.8e-49 199.1 183 56.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.0e-49 198.7 183 56.3
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 5.0e-49 198.7 212 53.3
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 5.0e-49 198.7 176 59.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 5.0e-49 198.7 206 54.4
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.5e-48 197.2 206 54.4
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.9e-48 196.8 207 54.1
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.9e-48 196.8 162 64.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.5e-48 196.4 198 55.1
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.5e-48 196.4 177 57.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.5e-48 196.4 177 57.1
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.5e-48 196.4 175 57.7
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 7.2e-48 194.9 206 53.9
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.2e-47 194.1 209 52.6
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.6e-47 193.7 209 53.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.6e-47 193.7 203 52.7
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.7e-47 193.0 198 54.5
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 3.6e-47 192.6 209 51.2
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.6e-47 192.6 163 61.3
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 4.7e-47 192.2 209 50.7
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.7e-47 192.2 209 53.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 6.1e-47 191.8 206 52.4
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 8.0e-47 191.4 180 57.2
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.0e-46 191.0 209 52.2
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.0e-46 191.0 205 52.7
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.4e-46 190.7 174 58.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 3.0e-46 189.5 209 51.2
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.2e-46 188.7 208 54.3
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 6.7e-46 188.3 211 50.2
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 6.7e-46 188.3 211 50.2
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.7e-46 188.3 155 61.3
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.1e-45 187.6 183 53.0
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.1e-45 187.6 154 62.3
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.5e-45 187.2 161 62.1
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.5e-45 187.2 166 59.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.0e-45 186.8 209 49.8
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.6e-45 186.4 154 63.6
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.3e-45 186.0 148 64.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 3.3e-45 186.0 168 58.3
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.4e-45 185.7 152 63.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.7e-44 183.7 154 63.0
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.2e-44 183.3 177 52.0
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.8e-44 183.0 176 58.0
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.8e-44 182.2 170 54.7
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 4.8e-44 182.2 158 62.0
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.1e-43 181.0 159 61.6
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-43 181.0 170 54.1
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.4e-43 180.6 173 54.3
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-43 180.6 173 54.3
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.4e-43 180.6 173 54.3
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-43 180.6 168 56.5
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 4.1e-43 179.1 158 60.8
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 7.0e-43 178.3 208 49.0
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 7.0e-43 178.3 208 49.0
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 9.1e-43 177.9 195 49.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 9.1e-43 177.9 144 61.8
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.2e-42 177.6 154 59.7
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 5.9e-42 175.3 177 52.5
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.3e-41 174.1 159 54.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.2e-41 173.3 174 54.0
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.9e-41 172.9 151 60.9
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 3.8e-41 172.6 192 49.5
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 5.0e-41 172.2 174 53.4
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.5e-41 171.8 177 52.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.2e-39 167.5 151 56.3
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-37 160.6 149 54.4
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.6e-37 159.8 143 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 5.7e-37 158.7 142 57.0
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-35 154.1 108 71.3
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-35 154.1 108 71.3
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-34 150.2 165 49.1
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 5.9e-34 148.7 172 46.5
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 8.5e-33 144.8 152 53.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 4.2e-32 142.5 121 59.5
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 8.0e-31 138.3 138 52.9
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.0e-30 137.9 121 57.9
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.8e-30 137.1 121 57.9
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 3.4e-29 132.9 122 55.7
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.4e-29 132.5 114 59.6
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 6.3e-28 128.6 123 52.8
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 8.3e-28 128.3 119 55.5
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-27 126.7 122 53.3
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.0e-26 123.6 86 75.6
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 2.7e-26 123.2 148 48.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.5e-26 122.9 74 81.1
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 4.5e-26 122.5 119 51.3
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 7.7e-26 121.7 113 56.6
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.3e-25 120.9 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.7e-25 120.6 74 79.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 2.3e-25 120.2 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.6e-25 118.2 74 77.0
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.6e-23 114.0 130 44.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 3.0e-22 109.8 138 39.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.0e-18 97.1 201 34.3
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.7e-18 96.7 93 55.9
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.8e-13 79.0 134 33.6
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 6.4e-12 75.5 82 54.9
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.4e-11 74.3 44 79.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 2.0e-10 70.5 44 72.7
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.0e-09 65.9 53 56.6
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.6e-09 65.5 53 54.7
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.4e-06 57.8 40 65.0
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.4e-06 57.8 40 65.0
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 2.3e-06 57.0 33 66.7


User provided reference genes

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