Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.8e-71 271.9 145 100.0
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 8.4e-52 207.2 123 91.1
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.1e-48 196.8 116 90.5
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.5e-48 196.4 120 90.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.5e-48 196.4 116 90.5
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.5e-48 195.7 116 90.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.3e-48 195.3 122 86.1
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 9.6e-48 193.7 120 88.3
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 9.6e-48 193.7 121 86.8
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 9.6e-48 193.7 122 84.4
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 4.7e-47 191.4 117 86.3
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.1e-46 190.3 124 85.5
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.4e-46 189.1 116 85.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.4e-46 189.1 116 86.2
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 2.4e-46 189.1 120 83.3
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.1e-46 188.7 116 88.8
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 4.0e-46 188.3 120 84.2
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 6.9e-46 187.6 121 86.8
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 9.0e-46 187.2 119 84.9
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 9.0e-46 187.2 109 90.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 9.0e-46 187.2 109 90.8
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-45 186.8 122 86.1
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-45 186.8 122 86.1
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.2e-45 186.8 120 83.3
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-45 186.4 116 85.3
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.0e-45 186.0 116 83.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.4e-45 185.3 116 84.5
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 4.4e-45 184.9 116 83.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.6e-45 184.1 122 86.1
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 7.6e-45 184.1 116 87.1
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 7.6e-45 184.1 116 82.8
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 7.6e-45 184.1 116 84.5
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 9.9e-45 183.7 120 84.2
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.9e-45 183.7 116 84.5
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.3e-44 183.3 120 84.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 1.3e-44 183.3 120 84.2
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.2e-44 182.6 120 82.5
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-44 182.2 116 82.8
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.9e-44 182.2 120 81.7
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 4.9e-44 181.4 114 83.3
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 4.9e-44 181.4 114 83.3
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 8.4e-44 180.6 114 82.5
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 8.4e-44 180.6 116 82.8
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-43 180.3 114 82.5
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-43 179.9 113 83.2
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.4e-43 179.9 113 83.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.4e-43 179.9 115 83.5
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.9e-43 179.5 109 85.3
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.9e-43 179.5 123 78.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.4e-43 179.1 122 81.1
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.4e-43 179.1 116 83.6
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.4e-43 179.1 111 86.5
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 3.2e-43 178.7 114 81.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.2e-43 178.7 114 81.6
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 4.2e-43 178.3 122 78.7
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 4.2e-43 178.3 108 87.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.2e-43 178.3 125 79.2
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 5.4e-43 177.9 123 78.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 5.4e-43 177.9 123 78.9
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 7.1e-43 177.6 120 81.7
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 7.1e-43 177.6 116 83.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.2e-42 176.8 123 78.9
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.1e-42 176.0 113 81.4
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.1e-42 176.0 113 81.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.1e-42 176.0 114 79.8
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.7e-42 175.6 113 81.4
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.7e-42 175.6 111 82.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.7e-42 175.6 123 78.9
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.7e-42 175.6 123 78.9
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 3.5e-42 175.3 113 81.4
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.6e-42 174.9 122 77.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 4.6e-42 174.9 116 81.0
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 7.8e-42 174.1 121 76.9
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 7.8e-42 174.1 121 76.9
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 7.8e-42 174.1 111 81.1
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 7.8e-42 174.1 122 79.5
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.0e-41 172.2 116 79.3
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.0e-41 172.2 121 78.5
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 5.1e-41 171.4 101 87.1
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 5.1e-41 171.4 115 81.7
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 6.6e-41 171.0 105 86.7
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.6e-41 171.0 101 87.1
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.1e-40 170.2 128 74.2
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.5e-40 169.9 123 78.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-40 169.9 113 79.6
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.5e-40 169.9 123 75.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.9e-40 169.5 100 87.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.9e-40 169.5 100 87.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.9e-40 169.5 100 87.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.9e-40 169.5 100 87.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 2.5e-40 169.1 116 77.6
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 3.3e-40 168.7 122 74.6
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.3e-40 168.7 116 80.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 5.6e-40 167.9 114 78.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 5.6e-40 167.9 125 76.0
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 7.3e-40 167.5 100 86.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 7.3e-40 167.5 111 76.6
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 9.6e-40 167.2 103 84.5
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 9.6e-40 167.2 121 75.2
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 9.6e-40 167.2 102 84.3
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 9.6e-40 167.2 116 80.2
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.6e-39 166.4 110 78.2
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.8e-39 165.6 114 77.2
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.8e-39 165.6 115 77.4
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.3e-38 161.4 120 76.7
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 6.9e-38 161.0 101 84.2
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.2e-37 160.2 125 70.4
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 3.4e-37 158.7 124 68.5
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 7.6e-37 157.5 105 78.1
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.7e-36 156.4 98 81.6
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.2e-36 156.0 124 67.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.4e-35 153.3 110 72.7
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 3.2e-35 152.1 114 72.8
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 4.2e-35 151.8 111 74.8
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 5.4e-35 151.4 109 70.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.7e-34 149.1 101 81.2
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 2.3e-33 146.0 96 78.1
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.1e-33 144.8 85 85.9
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.5e-32 143.3 105 76.2
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 7.4e-32 141.0 129 58.1
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 9.6e-32 140.6 105 71.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.3e-28 130.2 89 79.8
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-27 126.7 84 79.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.9e-27 126.3 103 67.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 9.3e-27 124.0 111 59.5
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-25 120.2 77 80.5
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.3e-25 120.2 77 80.5
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 3.9e-25 118.6 107 58.9
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-22 110.5 69 82.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 4.0e-22 108.6 68 80.9
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.2e-21 107.1 70 80.0
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-21 106.3 69 79.7
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.6e-21 105.9 67 80.6
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 3.4e-21 105.5 64 79.7
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 2.5e-19 99.4 98 53.1
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.6e-18 96.7 116 55.2
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-17 94.0 74 70.3
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 2.3e-17 92.8 56 83.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-16 90.5 85 62.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-16 89.0 73 68.5
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.3e-16 88.6 57 78.9
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 9.7e-16 87.4 68 72.1
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 3.1e-14 82.4 87 54.0
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.3e-12 77.0 103 46.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.3e-12 77.0 114 42.1
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.5e-12 74.7 82 56.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 6.5e-12 74.7 54 77.8
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 4.2e-11 72.0 47 78.7
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 9.4e-11 70.9 58 65.5
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 2.7e-10 69.3 53 67.9
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.4e-09 67.0 52 69.2
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.8e-09 66.6 59 57.6
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.5e-08 62.8 36 86.1
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.3e-08 62.4 121 33.9
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 7.4e-08 61.2 67 55.2
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.1e-06 55.8 38 73.7


User provided reference genes

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