Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33117 Davidia involucrata HOM05D004658 ORTHO05D005927 1.1e-108 396.7 211 100.0
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 7.6e-78 294.3 228 66.2
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 2.2e-77 292.7 227 74.9
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 3.5e-75 285.4 230 71.7
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 3.5e-75 285.4 227 63.9
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 4.6e-75 285.0 227 63.9
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 6.6e-74 281.2 227 64.3
Nitab4.5_0008277g0040 Nicotiana tabacum HOM05D004658 ORTHO05D005927 8.7e-74 280.8 227 61.7
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 8.7e-74 280.8 227 64.8
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 4.3e-73 278.5 227 63.4
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 7.3e-73 277.7 227 65.6
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 1.6e-72 276.6 227 66.5
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 2.8e-72 275.8 227 60.8
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 3.6e-72 275.4 226 61.9
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 3.6e-72 275.4 228 64.0
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 5.3e-71 271.6 224 62.1
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 6.9e-71 271.2 233 61.8
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 9.0e-71 270.8 227 62.6
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 1.2e-70 270.4 228 60.1
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 1.2e-70 270.4 227 60.4
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 1.2e-70 270.4 227 60.4
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 1.5e-70 270.0 188 70.7
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 1.5e-70 270.0 224 62.9
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 2.6e-70 269.2 226 65.9
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 2.6e-70 269.2 221 63.3
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 3.4e-70 268.9 235 66.8
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 4.4e-70 268.5 231 66.2
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 7.6e-70 267.7 227 61.2
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 9.9e-70 267.3 227 61.7
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 3.8e-69 265.4 223 59.6
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 3.8e-69 265.4 230 69.1
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 3.8e-69 265.4 226 61.5
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 3.8e-69 265.4 225 62.2
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 4.9e-69 265.0 229 67.7
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 4.9e-69 265.0 223 61.9
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 4.9e-69 265.0 218 64.7
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 6.4e-69 264.6 221 67.9
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 1.4e-68 263.5 228 59.2
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 1.9e-68 263.1 227 60.4
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 2.4e-68 262.7 224 61.2
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 3.2e-68 262.3 224 61.6
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 9.3e-68 260.8 252 62.7
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 2.1e-67 259.6 231 60.2
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 2.7e-67 259.2 229 65.1
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 3.5e-67 258.8 223 58.7
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 3.5e-67 258.8 229 60.3
Atru.chr5.997 Acer truncatum HOM05D004658 ORTHO05D005927 1.0e-66 257.3 221 61.5
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 1.0e-66 257.3 224 58.9
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 3.9e-66 255.4 227 57.3
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 5.1e-66 255.0 224 60.3
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 5.1e-66 255.0 240 57.1
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 5.1e-66 255.0 228 56.1
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 6.6e-66 254.6 224 60.3
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 6.6e-66 254.6 227 59.5
MD00G1179100 Malus domestica HOM05D004658 ORTHO05D005927 6.6e-66 254.6 228 57.5
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 8.7e-66 254.2 224 59.8
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 1.9e-65 253.1 228 55.7
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 2.5e-65 252.7 227 58.1
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 2.5e-65 252.7 227 66.1
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 4.3e-65 251.9 222 57.7
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 4.3e-65 251.9 219 61.6
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 7.3e-65 251.1 223 58.7
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 9.6e-65 250.8 187 66.8
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 1.3e-64 250.4 215 60.9
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 2.8e-64 249.2 222 57.7
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 4.8e-64 248.4 227 56.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 6.2e-64 248.1 226 57.1
FAN13G1327 Fragaria x ananassa HOM05D004658 ORTHO05D005927 6.2e-64 248.1 224 58.9
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.1e-63 247.3 226 56.6
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 1.4e-63 246.9 189 64.6
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 2.4e-63 246.1 215 58.1
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 3.1e-63 245.7 226 56.6
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 3.1e-63 245.7 231 55.4
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 4.0e-63 245.4 226 56.6
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 4.0e-63 245.4 216 60.6
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 5.3e-63 245.0 226 57.1
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 6.9e-63 244.6 226 61.5
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 9.0e-63 244.2 179 66.5
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 9.0e-63 244.2 226 58.0
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 1.2e-62 243.8 228 56.1
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 3.4e-62 242.3 225 63.1
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 4.5e-62 241.9 181 66.3
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 1.3e-61 240.4 226 55.3
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 2.9e-61 239.2 226 56.2
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 4.9e-61 238.4 224 54.9
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 8.4e-61 237.7 183 65.6
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 1.1e-60 237.3 210 60.5
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 1.1e-60 237.3 227 55.1
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 1.4e-60 236.9 187 61.5
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 2.4e-60 236.1 221 55.7
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 5.4e-60 235.0 188 62.2
BolC4t28757H Brassica oleracea HOM05D004658 ORTHO05D005927 5.4e-60 235.0 188 62.2
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 5.4e-60 235.0 226 62.4
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 5.4e-60 235.0 213 60.6
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 7.1e-60 234.6 188 63.3
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 9.3e-60 234.2 184 63.0
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 9.3e-60 234.2 188 62.8
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 9.3e-60 234.2 176 64.8
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 1.6e-59 233.4 188 61.7
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 2.7e-59 232.6 187 61.0
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 4.6e-59 231.9 227 56.8
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 1.9e-57 226.5 164 67.1
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 6.2e-56 221.5 151 71.5
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 4.5e-54 215.3 227 50.7
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 6.5e-53 211.5 186 58.6
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 1.9e-52 209.9 170 61.8
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 4.2e-52 208.8 188 56.9
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 7.9e-51 204.5 182 56.6
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 6.7e-50 201.4 171 59.6
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 6.9e-47 191.4 182 54.4
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 1.1e-44 184.1 180 50.6
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 4.2e-44 182.2 182 50.0
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 2.7e-43 179.5 180 51.7
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 5.1e-42 175.3 179 50.8
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 4.3e-41 172.2 177 51.4
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 1.6e-40 170.2 139 57.6
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 9.0e-39 164.5 180 45.0
CBR_g25724 Chara braunii HOM05D004658 ORTHO05D000184 2.2e-37 159.8 181 43.6
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 2.9e-37 159.5 166 51.8
Os07g0689400 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 4.2e-36 155.6 128 57.0
ECA232G2110 Erigeron canadensis HOM05D004658 ORTHO05D005927 3.3e-33 146.0 178 48.3
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 3.7e-32 142.5 114 60.5
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 3.1e-31 139.4 226 40.3
Lj1C17G9 Lonicera japonica HOM05D004658 ORTHO05D005927 2.9e-29 132.9 215 42.8
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 2.9e-29 132.9 114 58.8
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 2.6e-25 119.8 194 37.1
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 1.8e-23 113.6 173 37.0
RcHm_v2.0_Chr5g0055721 Rosa chinensis HOM05D004658 ORTHO05D005927 7.7e-22 108.2 107 51.4
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 5.0e-21 105.5 187 35.3
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 9.4e-20 101.3 117 43.6
Actinidia21402 Actinidia chinensis HOM05D004658 ORTHO05D054698 7.5e-17 91.7 151 48.3
SMO200G0105 Selaginella moellendorffii HOM05D004658 ORTHO05D000832 1.0e-13 81.3 157 33.1


User provided reference genes

Program Settings