Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 6.2e-123 444.1 222 100.0
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 5.5e-95 351.3 216 81.9
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.2e-94 350.1 216 81.5
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.3e-91 340.1 217 78.3
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.0e-89 332.8 219 78.1
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 2.6e-89 332.4 220 75.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 4.5e-89 331.6 220 76.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.7e-88 329.7 221 76.5
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 4.2e-87 325.1 226 75.7
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 5.5e-87 324.7 220 77.7
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 1.6e-86 323.2 218 76.1
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 4.7e-86 321.6 223 74.4
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.0e-85 320.5 225 75.6
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.0e-85 320.5 218 77.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.5e-84 316.6 224 74.1
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.5e-84 316.6 225 74.7
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.5e-84 316.6 224 73.7
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 2.0e-84 316.2 220 73.6
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.0e-84 316.2 220 73.6
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.0e-84 316.2 220 73.6
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 2.6e-84 315.8 222 73.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.7e-84 314.7 222 73.0
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 9.7e-84 313.9 218 75.2
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.3e-83 313.5 223 76.2
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.7e-83 313.2 223 72.2
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 2.2e-83 312.8 223 70.9
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.2e-83 312.8 220 73.2
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.2e-83 312.8 222 72.5
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.8e-83 312.4 223 71.7
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 4.8e-83 311.6 228 71.9
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 6.3e-83 311.2 220 72.7
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 6.3e-83 311.2 223 73.1
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 6.3e-83 311.2 222 75.2
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 8.2e-83 310.8 222 72.1
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.4e-82 310.1 220 73.2
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.4e-82 310.1 223 71.3
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 9.1e-82 307.4 223 70.4
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.6e-81 306.6 221 72.9
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.5e-81 305.4 222 71.6
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 7.7e-81 304.3 225 74.7
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.0e-80 303.9 222 69.4
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.7e-80 303.1 223 71.3
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 5.0e-80 301.6 231 70.1
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 6.5e-80 301.2 227 73.1
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 8.5e-80 300.8 231 69.3
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.5e-79 300.1 223 70.0
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.5e-79 299.3 222 70.7
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 4.2e-79 298.5 222 72.5
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 9.4e-79 297.4 222 71.2
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.7e-78 295.8 185 81.1
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 8.0e-78 294.3 219 69.4
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.8e-77 293.1 219 72.6
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 1.8e-77 293.1 190 82.1
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.8e-77 293.1 221 70.6
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 5.2e-77 291.6 219 70.8
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 4.4e-76 288.5 221 70.1
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 4.4e-76 288.5 222 70.7
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 4.4e-76 288.5 229 68.6
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 7.5e-76 287.7 221 70.1
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.1e-74 282.3 217 68.2
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.3e-72 276.9 223 68.6
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 1.1e-71 273.9 184 75.5
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.1e-71 273.9 233 64.8
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.9e-71 273.1 220 68.2
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 3.2e-71 272.3 217 65.4
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.2e-70 270.4 223 66.4
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 4.4e-68 261.9 249 59.0
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 2.2e-67 259.6 318 50.3
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 4.8e-67 258.5 188 72.9
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.8e-66 256.5 213 62.0
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 2.4e-66 256.1 188 72.3
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.2e-65 253.8 218 66.5
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 2.9e-64 249.2 187 69.5
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.1e-63 247.3 193 69.4
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.9e-63 246.5 212 62.3
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 3.2e-63 245.7 178 73.0
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 4.2e-63 245.4 224 60.3
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 4.2e-63 245.4 212 61.8
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.5e-63 245.0 207 65.2
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.6e-62 242.3 207 63.8
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 8.0e-62 241.1 231 60.2
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.0e-61 240.7 217 60.4
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.4e-61 240.4 200 66.0
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.4e-61 240.4 231 59.7
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.2e-61 238.4 185 66.5
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.2e-61 238.4 207 64.3
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 3.5e-57 225.7 216 58.3
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.0e-56 224.2 221 61.1
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.3e-56 223.8 185 65.9
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 5.0e-56 221.9 220 61.4
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 4.9e-51 205.3 171 66.1
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 6.4e-51 204.9 226 55.8
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.4e-50 203.8 225 54.7
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.0e-48 197.6 228 53.9
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 8.6e-48 194.5 163 69.9
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 5.6e-47 191.8 211 53.1
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 4.7e-46 188.7 226 52.2
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.4e-45 187.2 220 53.6
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.4e-45 187.2 220 53.6
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.8e-45 186.8 218 53.7
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 4.0e-45 185.7 234 54.3
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 8.9e-45 184.5 158 66.5
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 1.2e-44 184.1 218 54.1
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 2.6e-44 183.0 224 53.1
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.7e-43 180.3 223 49.8
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.7e-43 180.3 223 49.8
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.7e-43 180.3 223 49.8
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.9e-43 178.7 204 53.9
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.9e-43 178.7 202 54.0
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.0e-41 171.8 229 49.3
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 3.0e-40 169.5 191 53.9
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 4.3e-39 165.6 208 50.5
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 9.5e-39 164.5 207 49.3
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 3.4e-36 156.0 200 51.0
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 5.8e-36 155.2 153 59.5
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.4e-34 150.6 252 44.4
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 1.4e-34 150.6 155 54.8
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.3e-31 139.0 187 48.7
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.2e-30 137.5 126 62.7
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 1.8e-29 133.7 189 44.4
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.4e-18 96.7 201 42.3
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 6.0e-17 92.0 166 44.0
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 5.1e-16 89.0 132 50.0
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 2.4e-13 80.1 207 38.6
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 2.9e-11 73.2 181 38.1
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.9e-11 72.4 187 34.2
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.0e-08 64.7 34 88.2
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 3.9e-08 62.8 50 62.0
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 5.6e-07 58.9 58 55.2
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 7.4e-07 58.5 58 55.2


User provided reference genes

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