Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 6.0e-71 270.8 142 100.0
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.1e-63 245.7 142 89.4
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.1e-63 245.7 142 89.4
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 7.9e-63 243.8 142 87.3
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 1.0e-62 243.4 142 88.0
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 2.5e-61 238.8 141 85.8
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 9.7e-61 236.9 142 86.6
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 2.4e-59 232.3 142 82.4
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 5.3e-59 231.1 136 86.0
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 3.4e-58 228.4 142 83.1
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 7.6e-58 227.3 142 84.5
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 7.6e-58 227.3 142 80.3
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 2.2e-57 225.7 142 83.1
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 2.9e-57 225.3 166 72.3
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 3.8e-57 224.9 142 81.0
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.5e-56 222.2 142 78.9
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 4.2e-56 221.5 142 83.8
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 7.2e-56 220.7 142 81.0
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 9.3e-56 220.3 142 81.0
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 1.2e-55 219.9 143 81.1
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 2.7e-55 218.8 154 75.3
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 3.6e-55 218.4 142 81.7
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 4.6e-55 218.0 133 83.5
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 7.9e-55 217.2 144 78.5
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 2.3e-54 215.7 142 78.9
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 3.0e-54 215.3 163 71.8
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 5.1e-54 214.5 136 80.9
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 5.1e-54 214.5 142 78.9
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 4.3e-53 211.5 146 80.1
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 4.3e-53 211.5 142 77.5
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 4.3e-53 211.5 141 78.0
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 2.2e-52 209.1 142 77.5
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 2.8e-52 208.8 142 78.2
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 4.8e-52 208.0 137 79.6
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 8.2e-52 207.2 142 78.9
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 1.1e-51 206.8 142 76.1
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 1.1e-51 206.8 142 76.1
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 1.1e-51 206.8 147 75.5
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 1.4e-51 206.5 142 77.5
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 1.4e-51 206.5 143 76.9
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 1.4e-51 206.5 142 78.2
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 1.8e-51 206.1 142 78.2
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.8e-51 206.1 142 76.8
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.4e-51 205.7 142 76.1
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 2.4e-51 205.7 142 77.5
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 3.1e-51 205.3 142 74.6
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.1e-51 205.3 142 75.4
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 3.1e-51 205.3 147 76.2
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 4.1e-51 204.9 144 75.0
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 4.1e-51 204.9 144 75.0
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.5e-50 203.0 142 76.8
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 2.6e-50 202.2 146 73.3
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 2.6e-50 202.2 142 76.1
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 2.6e-50 202.2 116 87.9
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.4e-50 201.8 142 74.6
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 4.5e-50 201.4 142 75.4
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 5.9e-50 201.1 142 76.1
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.0e-49 200.3 142 73.2
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.7e-49 199.5 143 74.8
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 1.7e-49 199.5 143 74.8
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 2.9e-49 198.7 135 76.3
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 8.5e-49 197.2 142 73.9
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.1e-48 196.8 143 74.1
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 1.4e-48 196.4 142 71.8
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.4e-48 196.4 146 71.2
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.9e-48 196.1 121 81.0
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 1.9e-48 196.1 111 90.1
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 3.2e-48 195.3 121 80.2
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.2e-48 194.9 121 80.2
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 4.2e-48 194.9 128 79.7
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 4.2e-48 194.9 142 75.4
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 4.2e-48 194.9 142 74.6
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 5.5e-48 194.5 142 72.5
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 7.2e-48 194.1 142 73.9
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 9.4e-48 193.7 144 74.3
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 1.2e-47 193.4 128 75.0
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 1.6e-47 193.0 142 71.8
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 2.7e-47 192.2 143 71.3
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 2.7e-47 192.2 142 73.2
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.6e-47 191.8 139 75.5
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 3.6e-47 191.8 158 68.4
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 4.6e-47 191.4 121 79.3
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 6.1e-47 191.0 125 79.2
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 1.4e-46 189.9 145 72.4
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 1.4e-46 189.9 145 72.4
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 8.8e-46 187.2 142 70.4
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 1.1e-45 186.8 142 69.7
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 1.1e-45 186.8 118 81.4
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 2.0e-45 186.0 142 70.4
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.3e-44 183.3 142 71.8
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 1.7e-44 183.0 128 73.4
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 1.7e-44 183.0 149 68.5
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 3.1e-43 178.7 146 66.4
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 6.9e-43 177.6 129 74.4
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 5.0e-41 171.4 142 65.5
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 1.1e-40 170.2 150 62.7
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.9e-40 169.5 119 73.9
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 5.7e-37 157.9 118 71.2
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 2.8e-36 155.6 124 71.0
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.8e-35 152.9 152 59.2
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 1.8e-35 152.9 105 79.0
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 2.4e-35 152.5 132 64.4
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 2.6e-34 149.1 135 65.2
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.7e-33 146.4 86 87.2
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 2.2e-33 146.0 119 67.2
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 8.5e-33 144.1 157 56.1
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.1e-32 143.7 147 58.5
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 1.9e-32 142.9 119 66.4
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 7.2e-32 141.0 119 65.5
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 7.2e-32 141.0 119 65.5
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 1.2e-31 140.2 119 64.7
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 1.2e-31 140.2 119 64.7
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.2e-31 140.2 83 85.5
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.6e-31 139.8 122 64.8
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 6.1e-31 137.9 153 56.9
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 8.0e-31 137.5 117 59.8
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.0e-30 137.1 138 57.2
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 3.0e-30 135.6 127 59.1
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 4.0e-30 135.2 85 80.0
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 2.0e-29 132.9 91 76.9
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 2.0e-29 132.9 121 59.5
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 1.3e-28 130.2 85 80.0
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 2.2e-28 129.4 76 84.2
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 1.7e-25 119.8 95 68.4
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 1.1e-24 117.1 174 45.4
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 7.2e-24 114.4 73 79.5
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 2.1e-23 112.8 125 51.2
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 2.6e-21 105.9 136 46.3
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 6.5e-17 91.3 63 69.8
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 2.8e-15 85.9 127 44.1
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 8.0e-15 84.3 89 55.1
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 2.0e-13 79.7 84 56.0
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 9.8e-13 77.4 85 52.9
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.4e-11 73.6 42 83.3
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 9.5e-08 60.8 33 81.8
Aa31LG10G7880 Aethionema arabicum HOM05D005449 ORTHO05D006916 1.2e-07 60.5 74 52.7
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 4.0e-06 55.5 66 48.5
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 4.0e-06 55.5 66 48.5


User provided reference genes

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