Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1756.5 924 100.0
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1340.5 931 78.0
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1328.5 925 76.3
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1323.1 928 76.0
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 0.0e+00 1249.2 927 73.2
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 0.0e+00 1243.8 926 72.7
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1237.2 936 71.3
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 0.0e+00 1235.3 883 74.9
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1220.3 928 70.9
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1209.1 921 70.1
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 0.0e+00 1203.3 895 70.7
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 0.0e+00 1194.9 963 67.3
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1176.0 933 67.2
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1175.2 930 68.5
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 0.0e+00 1173.3 920 68.5
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 0.0e+00 1172.5 926 68.3
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 0.0e+00 1165.6 931 68.2
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 0.0e+00 1160.6 914 68.2
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 0.0e+00 1156.4 929 66.5
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 0.0e+00 1155.2 920 68.0
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 0.0e+00 1146.3 930 67.8
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1146.0 925 67.5
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 0.0e+00 1145.6 925 67.2
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1139.4 906 67.5
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 0.0e+00 1135.6 928 67.2
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 0.0e+00 1135.2 937 66.6
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1134.4 929 66.7
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 0.0e+00 1133.2 932 66.6
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1133.2 929 66.3
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 0.0e+00 1132.9 929 65.2
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 0.0e+00 1130.2 929 66.2
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 0.0e+00 1127.1 930 66.7
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1126.7 927 66.2
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1124.4 927 66.2
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 0.0e+00 1124.0 927 66.1
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 0.0e+00 1119.8 910 65.3
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 0.0e+00 1114.4 932 64.8
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 0.0e+00 1114.0 880 68.2
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 0.0e+00 1112.8 933 64.6
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 0.0e+00 1112.4 930 65.3
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 0.0e+00 1103.6 931 64.6
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 0.0e+00 1102.8 929 63.7
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 0.0e+00 1101.7 929 65.1
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 0.0e+00 1095.1 926 64.7
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 0.0e+00 1085.5 910 63.8
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 0.0e+00 1084.3 898 65.6
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1081.6 928 63.1
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 0.0e+00 1078.2 899 65.4
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 0.0e+00 1076.2 920 63.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 4.8e-310 1067.8 864 66.9
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 5.8e-308 1060.8 926 63.1
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.2e-307 1058.9 927 63.4
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 8.4e-307 1057.0 904 63.4
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 8.7e-304 1047.0 920 62.5
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 7.4e-303 1043.9 919 62.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.3e-302 1043.1 928 62.4
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.4e-301 1039.6 922 63.0
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 9.0e-301 1036.9 867 64.1
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.5e-300 1036.2 937 61.0
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 3.4e-300 1035.0 909 62.6
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 5.9e-300 1034.2 836 65.8
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.7e-299 1032.7 883 62.7
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.1e-298 1030.0 919 61.3
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 7.2e-298 1027.3 909 62.0
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.2e-297 1026.5 926 62.1
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.2e-294 1015.8 892 61.4
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 4.1e-293 1011.5 885 62.8
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 5.3e-293 1011.1 994 58.1
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 1.7e-291 1006.1 890 61.0
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 3.0e-288 995.3 659 80.3
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 4.4e-287 991.5 931 59.5
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 3.4e-284 981.9 892 59.5
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 5.9e-284 981.1 896 58.8
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 5.9e-284 981.1 895 59.1
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.0e-283 980.3 928 58.4
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.6e-281 973.0 882 59.1
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.1e-281 972.6 929 57.4
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 8.0e-281 970.7 928 57.9
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 3.0e-280 968.8 891 58.9
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.1e-279 966.8 753 67.5
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.2e-278 962.6 912 58.2
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.2e-278 962.6 912 58.2
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.3e-275 953.4 891 58.0
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.1e-273 946.0 796 63.6
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 4.7e-273 944.9 795 65.2
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 1.8e-272 943.0 768 65.1
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 6.7e-272 941.0 901 58.7
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 9.7e-271 937.2 778 64.9
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.7e-270 936.4 941 55.2
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 3.5e-268 928.7 923 55.8
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 2.8e-262 909.1 920 54.2
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.2e-258 895.2 886 55.4
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 8.0e-257 891.0 924 56.1
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 1.8e-240 836.6 802 56.0
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 2.1e-217 760.0 550 70.9
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 8.1e-209 731.5 672 59.5
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 1.7e-198 697.2 658 55.8
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.4e-197 694.1 551 65.0
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 6.2e-193 678.7 886 44.1
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 8.7e-187 658.3 712 55.1
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 4.1e-184 649.4 875 43.1
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 7.2e-181 638.6 805 50.6
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.4e-179 634.4 893 41.5
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.4e-176 623.6 895 40.8
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 2.5e-173 613.6 476 68.5
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.2e-154 551.6 863 39.7
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 8.6e-142 508.8 479 59.9
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.9e-121 439.9 374 65.0
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 2.7e-119 434.1 401 60.3
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 8.4e-113 412.5 923 32.0
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 6.6e-110 402.9 977 31.9
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.6e-103 380.2 349 56.4
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 7.3e-101 372.9 980 29.0
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.6e-100 370.5 449 49.9
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 8.1e-100 369.4 310 62.9
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 9.3e-96 355.9 290 64.1
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.5e-90 338.6 344 56.4
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 9.3e-88 329.3 952 28.6
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 8.7e-86 322.8 459 47.7
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 6.5e-81 306.6 268 60.8
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 1.8e-70 271.9 218 68.3
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 7.4e-69 266.5 256 56.2
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.3e-62 245.0 181 68.0
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 3.7e-60 237.7 391 43.5
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 1.2e-58 232.6 163 72.4
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.5e-56 223.8 324 40.4
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.1e-53 216.1 163 69.3
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-50 206.1 265 43.8
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 7.5e-45 186.8 132 75.0
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 5.5e-40 170.6 132 67.4
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.7e-36 159.1 177 45.2
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 4.8e-36 157.5 125 65.6
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 2.4e-35 155.2 129 68.2
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 8.5e-33 146.7 168 53.0
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 7.5e-29 133.7 97 74.2
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 6.3e-28 130.6 95 71.6
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 7.0e-19 100.5 63 82.5
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 5.0e-17 94.4 109 52.3
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.9e-16 92.4 154 32.5
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 4.3e-16 91.3 174 38.5
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 9.5e-16 90.1 92 54.3
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 4.7e-15 87.8 76 65.8
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 6.8e-14 84.0 133 42.9
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.5e-13 82.8 48 79.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.4e-11 75.5 120 41.7
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.6e-10 72.8 63 58.7
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 8.6e-09 67.0 58 58.6
Hma1.2p1_0158F.1_g069880 Hydrangea macrophylla HOM05D001181 ORTHO05D007712 1.9e-08 65.9 45 68.9


User provided reference genes

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