Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 5.2e-226 787.3 385 100.0
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.6e-174 616.3 386 79.8
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 4.0e-170 601.7 389 78.4
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 7.9e-166 587.4 378 76.2
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.9e-164 582.8 389 75.6
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 9.0e-162 573.9 378 75.9
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 2.0e-161 572.8 382 73.0
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 4.5e-161 571.6 388 74.0
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.4e-159 566.6 384 72.9
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.4e-159 566.6 362 77.6
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 3.6e-158 562.0 382 73.8
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 3.0e-157 558.9 380 73.9
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.1e-156 557.0 448 64.7
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 4.8e-155 551.6 383 71.0
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 5.3e-154 548.1 385 69.6
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.5e-153 545.0 380 71.6
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 3.8e-152 542.0 389 72.5
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 5.0e-152 541.6 375 73.1
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 8.5e-152 540.8 385 70.4
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 8.5e-152 540.8 386 71.2
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.1e-151 540.4 384 71.6
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 1.4e-151 540.0 347 76.1
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 5.5e-151 538.1 366 71.6
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 5.5e-151 538.1 384 69.0
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.2e-150 537.0 385 70.6
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.1e-150 536.2 343 76.4
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.4e-149 533.5 384 67.7
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 3.0e-149 532.3 379 69.4
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.3e-148 528.9 386 68.1
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 4.4e-148 528.5 382 69.9
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 5.7e-148 528.1 384 68.2
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 5.7e-148 528.1 368 69.8
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 9.7e-148 527.3 369 69.6
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.7e-147 526.6 385 70.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 2.2e-147 526.2 384 68.0
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 2.8e-147 525.8 383 68.7
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.8e-147 525.8 382 67.8
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 3.7e-147 525.4 375 69.3
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 4.8e-147 525.0 384 67.7
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.2e-147 524.2 384 67.7
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 2.4e-146 522.7 379 68.9
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 5.3e-146 521.5 381 68.0
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.6e-145 519.2 383 68.4
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.0e-144 517.3 355 71.8
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.0e-144 517.3 379 67.8
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.2e-144 516.2 374 68.4
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.2e-144 516.2 400 69.8
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 5.0e-144 515.0 388 66.0
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.1e-143 513.8 344 73.3
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 2.5e-143 512.7 377 68.2
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 2.5e-143 512.7 350 70.9
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 4.2e-143 511.9 382 68.3
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 7.2e-143 511.1 361 70.4
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 9.4e-143 510.8 382 67.3
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 9.4e-143 510.8 368 68.8
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 9.4e-143 510.8 375 66.9
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.6e-142 510.0 382 66.0
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.6e-142 510.0 362 71.3
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.6e-142 510.0 378 69.3
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.6e-142 510.0 378 66.4
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.1e-142 509.6 382 67.3
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.1e-142 509.6 382 67.3
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 2.7e-142 509.2 381 66.7
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 2.7e-142 509.2 399 65.2
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.7e-142 509.2 378 69.0
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 4.7e-142 508.4 389 67.9
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 6.1e-142 508.1 366 68.3
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 7.9e-142 507.7 385 67.3
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.0e-141 507.3 380 67.4
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-141 506.9 395 64.6
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.4e-141 506.9 374 66.8
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.2e-141 505.0 382 66.8
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 6.7e-141 504.6 382 66.8
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 8.8e-141 504.2 373 64.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.6e-140 502.7 384 64.3
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 4.4e-140 501.9 364 66.5
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.7e-139 500.0 375 66.1
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.7e-139 500.0 379 66.0
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 2.2e-139 499.6 381 65.6
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 2.8e-139 499.2 389 62.7
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 2.8e-139 499.2 378 67.7
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 1.4e-138 496.9 375 66.7
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.8e-138 496.5 380 65.5
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 1.2e-137 493.8 368 67.4
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.5e-137 491.9 373 63.5
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 1.0e-136 490.7 409 62.1
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 2.5e-135 486.1 362 67.4
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 5.5e-135 485.0 376 64.4
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.0e-133 480.7 351 65.8
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.8e-133 477.6 403 59.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 2.6e-132 476.1 360 65.6
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.3e-131 473.8 349 65.3
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.7e-131 472.2 367 64.3
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 5.3e-130 468.4 416 57.9
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.1e-127 460.7 399 61.2
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 4.2e-127 458.8 392 58.9
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 7.2e-127 458.0 392 60.7
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.0e-126 454.5 416 58.2
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 4.0e-125 452.2 343 65.6
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 5.2e-125 451.8 334 70.1
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 1.5e-124 450.3 364 60.7
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 3.4e-124 449.1 372 59.9
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 7.5e-124 448.0 346 64.7
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.7e-123 446.8 389 59.9
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.7e-123 446.8 350 64.6
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 1.1e-122 444.1 445 55.1
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.4e-122 443.7 314 71.3
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 7.0e-122 441.4 349 63.3
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 1.6e-121 440.3 389 59.4
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 3.8e-120 435.6 382 59.9
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.8e-120 435.6 403 56.3
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.8e-118 429.5 364 61.3
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.1e-118 428.3 406 55.2
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.1e-118 428.3 364 61.3
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 2.6e-116 422.9 377 57.0
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.7e-115 420.2 348 59.5
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 2.8e-115 419.5 546 44.5
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 6.3e-115 418.3 364 61.0
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 3.1e-114 416.0 374 58.6
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 7.8e-113 411.4 270 74.8
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 5.0e-112 408.7 328 60.1
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.3e-111 406.0 389 56.8
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-110 404.1 522 45.2
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.6e-108 396.4 275 72.7
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.6e-105 387.1 266 74.8
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 9.5e-103 377.9 352 57.7
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.2e-102 377.5 273 64.8
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 8.3e-99 364.8 380 51.8
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 5.0e-96 355.5 307 60.6
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 5.6e-95 352.1 244 68.4
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 8.9e-93 344.7 261 65.9
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.1e-90 337.8 357 50.1
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 7.1e-90 335.1 370 51.4
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 2.7e-89 333.2 241 68.5
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.7e-88 330.5 368 47.6
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 9.9e-84 314.7 207 74.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.9e-82 310.5 357 47.6
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 2.5e-79 300.1 389 45.2
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.0e-76 290.4 290 54.5
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 2.9e-75 286.6 530 36.4
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.9e-67 260.0 197 66.0
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.4e-67 258.8 353 44.2
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 3.0e-56 223.4 297 42.4
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 4.8e-54 216.1 267 45.3
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 5.5e-50 202.6 190 50.0
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.8e-40 171.0 375 32.3
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.1e-39 168.3 122 68.0
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.5e-39 167.9 180 53.3
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 5.3e-37 159.5 335 31.9
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 2.5e-34 150.6 328 29.6
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 2.6e-28 130.6 94 68.1
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.6e-25 120.2 117 51.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.0e-23 114.4 81 66.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 5.5e-18 96.3 63 74.6
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.0e-16 92.0 56 73.2
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 3.3e-15 87.0 48 81.2
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.6e-12 78.2 42 81.0
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.2e-09 68.6 123 38.2
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 5.7e-07 59.7 43 60.5
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 1.3e-06 58.5 45 51.1


User provided reference genes

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