Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.4e-213 746.1 395 100.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.2e-126 456.4 267 91.8
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 8.2e-126 454.5 275 88.0
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.9e-124 448.4 262 90.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.3e-123 447.2 262 90.8
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.3e-123 447.2 262 90.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.9e-123 446.0 263 90.1
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 2.9e-123 446.0 261 90.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.8e-123 445.7 262 91.2
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.8e-123 445.7 262 91.2
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.8e-123 445.7 262 91.2
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 8.5e-123 444.5 262 90.5
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-122 444.1 262 89.7
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.5e-122 443.0 262 91.2
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.2e-122 442.6 262 89.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.2e-122 442.6 267 88.4
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 3.2e-122 442.6 262 90.1
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 9.4e-122 441.0 262 89.3
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.2e-121 440.7 262 89.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.2e-121 440.7 262 89.3
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.6e-121 440.3 262 89.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.6e-121 439.1 262 88.9
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 6.1e-121 438.3 262 89.3
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.0e-120 436.0 262 88.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 5.1e-120 435.3 274 83.2
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 5.1e-120 435.3 262 87.8
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.1e-119 434.1 262 87.8
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.5e-119 433.7 262 88.2
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.5e-119 433.7 262 88.5
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.0e-119 433.3 262 88.2
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.3e-119 432.6 272 83.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 4.4e-119 432.2 262 86.3
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 5.7e-119 431.8 272 83.5
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.3e-118 430.6 262 86.6
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.2e-118 429.9 262 87.0
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 3.7e-118 429.1 262 86.6
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-117 427.6 278 83.8
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.1e-117 427.6 262 85.5
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.4e-117 427.2 277 81.6
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.8e-117 426.8 262 84.7
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 3.1e-117 426.0 262 87.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 3.1e-117 426.0 262 85.5
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.3e-117 425.2 262 84.7
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 5.3e-117 425.2 262 85.9
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 5.3e-117 425.2 262 86.3
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 5.3e-117 425.2 262 86.3
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 7.0e-117 424.9 262 86.3
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 9.1e-117 424.5 312 74.7
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 9.1e-117 424.5 262 86.3
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 9.1e-117 424.5 263 85.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.2e-116 424.1 262 85.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.2e-116 424.1 262 85.5
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.5e-116 423.7 262 86.6
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.5e-116 423.7 262 84.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.0e-116 423.3 262 87.0
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.0e-116 423.3 262 84.4
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.0e-116 423.3 262 84.7
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.6e-116 422.9 262 84.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 3.4e-116 422.5 262 85.5
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 4.5e-116 422.2 262 85.9
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 4.5e-116 422.2 262 85.1
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 5.9e-116 421.8 262 87.0
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 7.7e-116 421.4 264 86.0
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 7.7e-116 421.4 262 84.4
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.0e-115 421.0 262 83.6
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.3e-115 420.6 262 84.7
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.2e-115 419.9 262 85.1
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.2e-115 419.9 262 84.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.2e-115 419.9 262 84.4
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.2e-115 419.9 262 83.6
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 6.5e-115 418.3 262 85.9
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 6.5e-115 418.3 262 85.9
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.4e-114 417.2 262 83.6
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-114 416.8 263 85.6
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.2e-114 416.0 262 84.0
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 9.4e-114 414.5 284 80.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-113 413.7 262 83.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.7e-113 412.9 262 83.6
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.7e-113 412.9 262 83.6
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.1e-113 411.8 262 83.6
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 8.0e-113 411.4 262 82.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.0e-112 411.0 259 84.6
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.8e-112 410.2 262 82.4
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.8e-112 410.2 252 84.5
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 8.8e-112 407.9 263 82.9
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 8.8e-112 407.9 264 82.6
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-111 407.1 263 82.5
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.3e-111 406.0 262 80.9
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.3e-111 406.0 262 83.6
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 3.7e-110 402.5 262 82.4
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.7e-110 402.5 262 82.4
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.7e-110 402.5 264 81.8
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 2.4e-109 399.8 262 81.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 3.1e-109 399.4 260 82.7
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.0e-109 398.3 264 79.9
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 9.1e-109 397.9 247 86.6
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 3.5e-108 396.0 262 81.7
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 5.9e-108 395.2 247 85.8
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 7.7e-108 394.8 262 80.2
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 7.7e-108 394.8 262 80.2
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.3e-107 394.0 262 79.4
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.2e-107 393.3 263 81.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.9e-107 392.9 262 79.0
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.8e-107 392.5 262 79.8
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.8e-107 392.5 262 79.8
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.8e-107 392.5 262 79.8
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.8e-107 392.5 262 79.8
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 6.5e-107 391.7 262 79.8
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 6.5e-107 391.7 262 79.8
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-106 391.0 262 79.8
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-106 391.0 262 79.8
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.5e-106 390.6 255 83.1
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-106 390.6 262 79.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-106 390.2 263 79.8
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-106 390.2 263 79.8
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.9e-106 390.2 263 79.8
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.9e-106 390.2 262 79.4
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.2e-106 389.4 262 79.4
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.2e-106 389.0 262 79.4
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 7.2e-106 388.3 262 78.6
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 7.2e-106 388.3 262 79.0
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.2e-105 387.5 265 80.0
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.7e-105 386.3 263 81.0
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.7e-105 386.3 270 77.8
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.1e-105 385.2 263 80.6
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.5e-103 380.6 263 79.5
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.7e-102 377.1 270 76.3
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.4e-101 373.2 263 78.7
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 7.0e-101 371.7 263 78.7
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.1e-101 371.3 263 79.5
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.7e-99 367.1 248 80.6
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.0e-99 365.5 264 76.5
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.5e-98 364.0 225 86.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.5e-98 364.0 262 77.1
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.4e-95 352.8 249 74.3
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.2e-94 350.1 264 74.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 4.1e-93 345.9 241 80.1
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.2e-92 344.4 210 85.7
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.5e-92 342.4 214 86.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.0e-91 341.3 234 77.4
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.7e-89 332.4 226 77.0
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.7e-89 332.4 238 72.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 7.5e-87 325.1 223 74.4
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.7e-86 322.8 263 66.2
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 7.0e-85 318.5 219 76.3
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.6e-81 306.2 267 62.2
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.0e-80 302.8 247 69.2
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.5e-79 300.8 250 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 7.8e-76 288.5 218 67.4
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.5e-74 283.5 236 61.4
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.6e-73 280.8 250 64.0
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.7e-73 279.3 204 75.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.0e-72 276.2 262 65.6
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 3.4e-71 273.1 263 61.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.9e-70 270.0 208 67.8
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.0e-67 261.5 270 55.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.3e-64 250.4 211 63.0
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.0e-60 235.7 235 61.3
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.1e-56 223.4 130 86.9
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 8.4e-54 215.3 120 94.2
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.6e-52 211.1 244 51.2
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.3e-50 203.4 245 49.0
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 6.2e-49 199.1 138 79.0
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 4.2e-45 186.4 179 60.9
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.2e-44 184.9 118 83.9
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.7e-38 164.5 191 53.9
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 7.1e-37 159.1 141 66.0
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-28 131.3 96 68.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.8e-25 120.6 69 92.8


User provided reference genes

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