Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 2.5e-80 302.0 147 100.0
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 5.7e-48 194.5 142 64.8
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 9.7e-48 193.7 146 63.0
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.7e-47 193.0 152 63.8
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 1.1e-46 190.3 154 59.1
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 4.1e-46 188.3 146 61.0
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 5.3e-46 188.0 146 64.4
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 2.6e-45 185.7 150 62.0
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 3.4e-45 185.3 150 62.0
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.3e-44 183.3 144 60.4
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 1.3e-44 183.3 143 64.3
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 3.8e-44 181.8 147 57.8
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 6.5e-44 181.0 144 62.5
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.1e-43 180.3 146 58.9
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.4e-43 179.9 146 58.9
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 3.2e-43 178.7 158 59.5
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 4.2e-43 178.3 146 58.2
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 1.6e-42 176.4 146 58.9
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.6e-42 176.4 146 56.8
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.6e-42 176.4 145 55.9
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 2.1e-42 176.0 146 58.9
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 2.7e-42 175.6 153 57.5
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 2.7e-42 175.6 142 59.2
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 3.6e-42 175.3 143 57.3
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 6.1e-42 174.5 145 57.9
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 3.0e-41 172.2 143 55.9
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 5.2e-41 171.4 146 55.5
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 5.2e-41 171.4 141 55.3
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.7e-41 171.0 143 55.9
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.7e-41 171.0 143 55.9
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 8.8e-41 170.6 143 55.9
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 8.8e-41 170.6 142 57.7
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.5e-40 169.9 143 55.9
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 3.3e-40 168.7 147 53.1
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 3.3e-40 168.7 146 52.7
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.4e-40 168.3 143 55.9
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 4.4e-40 168.3 146 56.2
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 7.4e-40 167.5 143 55.2
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 7.4e-40 167.5 143 55.2
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 1.3e-39 166.8 149 53.7
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.1e-38 163.7 139 57.6
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 1.1e-38 163.7 137 51.8
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 2.4e-38 162.5 150 51.3
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 9.1e-38 160.6 133 54.1
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 2.0e-37 159.5 150 53.3
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 1.3e-36 156.8 133 52.6
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.7e-36 156.4 130 53.8
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 2.9e-36 155.6 147 51.0
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 3.8e-36 155.2 149 50.3
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 1.1e-35 153.7 149 52.3
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 5.5e-35 151.4 142 50.7
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 7.2e-35 151.0 137 51.8
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.2e-34 150.2 129 52.7
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 8.0e-34 147.5 146 50.7
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.3e-33 146.0 142 49.3
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 3.0e-33 145.6 139 49.6
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 8.8e-33 144.1 142 46.5
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 1.5e-32 143.3 148 44.6
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.5e-32 143.3 149 44.3
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 2.0e-32 142.9 149 46.3
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 2.6e-32 142.5 148 44.6
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 5.7e-32 141.4 138 46.4
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 5.7e-32 141.4 149 44.3
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 5.3e-30 134.8 136 49.3
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 7.0e-30 134.4 129 50.4
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 1.2e-29 133.7 134 47.8
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 2.7e-29 132.5 127 50.4
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 2.7e-29 132.5 148 43.2
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 3.5e-29 132.1 141 46.8
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 3.5e-29 132.1 136 47.1
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 7.7e-29 131.0 160 44.4
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.0e-28 130.6 149 41.6
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 1.7e-28 129.8 160 44.4
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 3.8e-28 128.6 152 40.8
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.9e-27 126.3 153 39.9
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 1.6e-26 123.2 146 40.4
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 3.4e-24 115.5 149 37.6
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 8.3e-23 110.9 144 40.3
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.1e-14 84.0 60 63.3
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 7.0e-14 81.3 85 51.8
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 2.0e-13 79.7 74 54.1
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 2.9e-12 75.9 56 62.5


User provided reference genes

Program Settings