Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 9.9e-158 560.1 282 100.0
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 1.5e-81 307.0 302 64.2
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 2.0e-57 226.9 292 49.7
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 3.4e-57 226.1 295 49.8
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 4.4e-57 225.7 286 48.6
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 9.8e-57 224.6 301 47.5
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 2.2e-56 223.4 294 51.7
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 3.5e-54 216.1 318 48.7
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 7.8e-54 214.9 302 47.4
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.9e-52 210.3 285 47.7
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 2.5e-52 209.9 299 47.5
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 7.3e-52 208.4 288 47.6
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 2.1e-51 206.8 302 45.7
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 4.9e-48 195.7 323 45.2
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.4e-47 194.1 300 47.3
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 2.4e-47 193.4 275 42.9
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 2.4e-47 193.4 304 44.7
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 3.2e-47 193.0 290 46.6
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 7.1e-47 191.8 305 43.9
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 6.0e-46 188.7 310 43.2
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 7.8e-46 188.3 291 46.0
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 3.0e-45 186.4 287 46.7
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 3.0e-45 186.4 293 46.4
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 3.9e-45 186.0 268 46.6
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 6.6e-45 185.3 267 43.1
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 8.6e-45 184.9 307 41.7
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 8.6e-45 184.9 300 44.3
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 8.6e-45 184.9 300 44.3
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-44 184.5 291 45.7
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.5e-44 184.1 283 43.5
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.5e-44 184.1 313 40.6
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.9e-44 183.7 302 44.7
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 5.6e-44 182.2 285 41.1
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 7.3e-44 181.8 305 40.0
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 9.6e-44 181.4 293 44.4
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 9.6e-44 181.4 293 44.4
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 9.6e-44 181.4 303 43.9
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.1e-43 180.3 287 43.2
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 4.7e-43 179.1 304 43.4
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.7e-43 179.1 287 40.4
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.7e-43 179.1 287 40.4
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 2.4e-42 176.8 243 46.9
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 3.1e-42 176.4 267 45.3
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 2.2e-40 170.2 275 45.5
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 3.8e-40 169.5 259 40.2
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 6.4e-40 168.7 267 43.1
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.9e-39 167.2 297 42.4
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 7.1e-39 165.2 270 41.1
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.1e-38 163.7 301 42.5
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 7.8e-38 161.8 270 41.9
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 1.3e-37 161.0 288 37.2
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.3e-37 161.0 291 42.3
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 1.1e-36 157.9 292 40.1
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 4.3e-36 156.0 230 43.5
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 7.3e-36 155.2 281 43.1
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.6e-35 152.9 283 39.6
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 8.1e-35 151.8 293 38.6
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 1.1e-34 151.4 262 38.9
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-34 151.4 257 42.4
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 2.4e-34 150.2 296 39.2
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 2.4e-34 150.2 297 37.7
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 1.5e-33 147.5 304 40.8
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.5e-33 147.5 295 37.6
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 3.4e-33 146.4 257 40.1
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.4e-33 146.0 257 40.5
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.1e-31 141.4 283 39.9
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 1.9e-31 140.6 295 38.0
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 9.3e-31 138.3 296 36.8
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 2.7e-30 136.7 278 38.8
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 3.5e-30 136.3 258 38.8
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 3.5e-30 136.3 262 39.7
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 1.7e-29 134.0 257 39.7
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 3.0e-29 133.3 260 41.9
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 3.9e-29 132.9 210 44.3
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.1e-28 131.3 257 39.3
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.9e-28 130.6 286 36.4
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 3.6e-27 126.3 226 42.5
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 6.2e-27 125.6 270 35.9
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.4e-25 119.8 268 35.8
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 2.9e-24 116.7 276 37.0
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 3.8e-24 116.3 286 35.7
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 6.4e-24 115.5 305 30.5
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.4e-23 114.4 306 32.7
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 3.2e-23 113.2 280 34.3
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 5.5e-23 112.5 262 34.4
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.6e-22 110.9 189 40.2
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 7.9e-22 108.6 241 35.3
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.0e-21 108.2 121 53.7
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 3.0e-21 106.7 217 38.2
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 6.7e-21 105.5 306 33.0
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 1.9e-20 104.0 293 30.7
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 5.6e-20 102.4 292 30.5
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.3e-19 101.3 283 31.4
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 3.7e-19 99.8 270 31.1
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 4.8e-19 99.4 245 33.5
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 4.8e-19 99.4 295 30.8
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 8.1e-19 98.6 288 30.9
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.1e-18 98.2 287 33.4
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 1.4e-18 97.8 236 34.7
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 1.4e-18 97.8 322 28.9
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 2.4e-18 97.1 241 32.4
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 4.0e-18 96.3 257 35.8
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 5.3e-18 95.9 279 31.2
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 5.3e-18 95.9 283 31.8
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 6.9e-18 95.5 312 30.4
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 2.0e-17 94.0 294 31.3
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 2.6e-17 93.6 256 32.0
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 3.4e-17 93.2 256 32.4
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 3.4e-17 93.2 322 30.7
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 7.6e-17 92.0 287 30.7
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 1.7e-16 90.9 257 31.9
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 1.7e-16 90.9 364 33.0
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 3.8e-16 89.7 276 29.7
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 1.1e-15 88.2 255 34.1
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 1.2e-14 84.7 267 35.2
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 2.1e-14 84.0 331 32.0
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 3.9e-13 79.7 301 27.6
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 5.1e-13 79.3 169 35.5
Lsat_1_v5_gn_7_2960 Lactuca sativa HOM05D002069 ORTHO05D001421 5.1e-13 79.3 159 38.4
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 1.5e-12 77.8 274 27.0
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 1.9e-12 77.4 265 34.0
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 7.4e-12 75.5 240 29.2
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 9.6e-12 75.1 328 30.2
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 1.1e-10 71.6 199 32.2
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 1.8e-10 70.9 227 32.2
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 4.1e-10 69.7 253 30.4
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.9e-10 68.9 87 47.1
Dinv10923 Davidia involucrata HOM05D007199 ORTHO05D007257 1.2e-09 68.2 46 78.3
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 9.3e-07 58.5 186 32.8


User provided reference genes

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