Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 1.1e-180 636.7 365 100.0
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 8.3e-141 504.2 368 82.6
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 9.3e-92 341.3 363 62.8
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 1.9e-89 333.6 367 59.4
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 3.2e-84 316.2 366 59.3
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 4.2e-84 315.8 366 56.3
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 3.6e-83 312.8 353 57.5
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 2.3e-82 310.1 371 56.9
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 2.0e-81 307.0 352 58.0
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 4.3e-81 305.8 363 55.9
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 1.7e-80 303.9 357 57.7
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 3.7e-80 302.8 353 56.7
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 6.3e-80 302.0 345 57.4
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 5.3e-79 298.9 347 55.9
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 9.1e-79 298.1 367 57.8
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 3.4e-78 296.2 348 55.2
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 3.4e-78 296.2 357 56.0
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 1.3e-77 294.3 339 59.3
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 3.8e-77 292.7 373 55.5
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 8.5e-77 291.6 392 54.1
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 1.1e-76 291.2 361 56.8
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 4.2e-76 289.3 364 51.4
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 4.2e-76 289.3 353 58.9
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 5.5e-76 288.9 360 58.1
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 9.4e-76 288.1 383 53.3
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 9.4e-76 288.1 365 56.7
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 9.4e-76 288.1 396 53.0
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 1.6e-75 287.3 341 56.9
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 3.6e-75 286.2 399 52.9
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 1.4e-74 284.3 343 56.6
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 1.8e-74 283.9 365 55.3
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 3.0e-74 283.1 359 51.0
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 5.1e-74 282.3 383 50.4
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 5.1e-74 282.3 345 53.0
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 8.8e-74 281.6 390 53.6
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 1.1e-73 281.2 395 50.9
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 2.0e-73 280.4 378 50.5
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 7.4e-73 278.5 315 54.6
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.7e-72 277.3 298 56.4
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 3.7e-72 276.2 326 58.6
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 3.7e-72 276.2 353 52.1
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 1.2e-70 271.2 342 56.7
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 7.7e-70 268.5 375 55.2
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 1.0e-69 268.1 349 50.7
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 1.7e-69 267.3 369 50.4
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 2.2e-69 266.9 359 54.9
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 2.2e-69 266.9 360 53.9
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 2.9e-69 266.5 357 52.9
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 5.0e-69 265.8 373 52.3
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 1.9e-68 263.8 292 61.3
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 3.2e-68 263.1 372 51.3
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 7.2e-68 261.9 315 56.5
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 7.2e-68 261.9 297 56.2
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.2e-67 261.2 352 48.0
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 2.1e-67 260.4 376 51.3
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 2.7e-67 260.0 290 58.3
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 2.7e-67 260.0 304 55.3
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 1.0e-66 258.1 294 60.9
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.0e-66 258.1 350 52.3
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 1.4e-66 257.7 363 52.9
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 4.0e-66 256.1 342 48.8
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 1.5e-65 254.2 221 64.7
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 5.7e-65 252.3 316 53.8
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 5.7e-65 252.3 369 48.5
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 9.7e-65 251.5 395 45.6
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.3e-64 251.1 367 49.3
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.3e-64 251.1 367 49.3
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 2.2e-64 250.4 365 47.1
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 2.8e-64 250.0 315 52.7
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 3.7e-64 249.6 340 50.3
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 4.8e-64 249.2 375 50.4
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 6.3e-64 248.8 368 47.6
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.1e-63 248.1 362 45.3
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 3.1e-63 246.5 375 48.0
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 3.5e-62 243.0 348 48.6
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 3.5e-62 243.0 375 46.9
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 4.5e-62 242.7 296 55.4
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 4.5e-62 242.7 298 54.7
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 4.5e-62 242.7 292 58.2
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 1.0e-61 241.5 364 46.7
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.8e-61 239.6 366 48.9
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 2.5e-60 236.9 352 49.4
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 2.5e-60 236.9 364 48.6
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 3.2e-60 236.5 353 51.8
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.2e-60 236.5 360 47.8
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 5.5e-60 235.7 362 44.8
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 1.6e-59 234.2 216 61.6
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 1.6e-59 234.2 399 44.4
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 2.1e-59 233.8 374 45.5
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 3.6e-59 233.0 283 55.1
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 4.7e-59 232.6 283 54.8
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 8.0e-59 231.9 290 50.7
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.4e-58 231.1 341 46.6
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 2.3e-58 230.3 264 63.3
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 8.8e-58 228.4 216 58.3
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 2.6e-57 226.9 292 55.5
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 7.5e-57 225.3 283 52.7
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 4.8e-56 222.6 216 58.3
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 8.3e-56 221.9 365 49.3
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 1.4e-55 221.1 379 47.0
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 7.0e-55 218.8 283 53.7
Eucgr.L00085 Eucalyptus grandis HOM05D004310 ORTHO05D005403 7.0e-55 218.8 340 47.6
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 9.1e-55 218.4 283 53.0
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 1.6e-54 217.6 364 46.7
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 2.7e-54 216.9 217 56.2
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 5.9e-54 215.7 292 53.8
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 1.0e-53 214.9 286 50.3
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 1.3e-53 214.5 215 55.3
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 2.9e-53 213.4 358 42.7
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 8.5e-53 211.8 343 46.1
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 1.1e-52 211.5 343 46.1
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 9.4e-52 208.4 356 43.5
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 1.6e-51 207.6 381 43.0
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 2.1e-51 207.2 303 46.9
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 4.7e-51 206.1 208 54.8
Cpa.g.sc148.40 Carica papaya HOM05D004310 ORTHO05D005403 6.1e-51 205.7 219 52.5
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 6.8e-50 202.2 288 48.3
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 2.2e-48 197.2 346 43.9
Ah.05g179620 Amaranthus hybridus HOM05D004310 ORTHO05D005403 1.1e-47 194.9 306 44.8
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 9.2e-47 191.8 242 51.7
CARHR249360 Cardamine hirsuta HOM05D004310 ORTHO05D005403 1.6e-46 191.0 206 52.4
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 2.7e-46 190.3 202 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4433 Anthoceros agrestis HOM05D004310 ORTHO05D005403 2.2e-40 170.6 183 51.9
Pp3c22_11010 Physcomitrium patens HOM05D004310 ORTHO05D005403 3.7e-40 169.9 215 50.2
Mapoly0080s0014 Marchantia polymorpha HOM05D004310 ORTHO05D005403 7.0e-39 165.6 298 44.3
MBI13_g41011_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 3.5e-38 163.3 157 61.1
Aa31sc508G10 Aethionema arabicum HOM05D004310 ORTHO05D005403 3.9e-37 159.8 153 57.5
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 2.8e-35 153.7 226 43.8
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 2.6e-33 147.1 207 43.5
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 3.3e-28 130.2 257 44.4
HPP92_024432 Vanilla planifolia HOM05D004310 ORTHO05D005403 4.7e-27 126.3 169 50.3
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 7.1e-23 112.5 216 36.1
Cre07.g322100 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 9.5e-20 102.1 140 45.7
arahy.Tifrunner.gnm1.ann1.FB4WK1 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.2e-19 101.7 112 51.8
Lsat_1_v5_gn_8_60321 Lactuca sativa HOM05D004310 ORTHO05D005403 1.2e-19 101.7 60 83.3
MCO02G408 Micromonas commoda HOM05D004310 ORTHO05D005403 6.2e-19 99.4 217 36.4
ATR1116G001 Amborella trichopoda HOM05D004310 ORTHO05D005403 4.4e-17 93.2 102 52.9
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 7.1e-15 85.9 146 53.4
GSVIVG01027093001 Vitis vinifera HOM05D004310 ORTHO05D005403 2.3e-13 80.9 163 42.9
arahy.Tifrunner.gnm1.ann1.LY1RHD Arachis hypogaea HOM05D004310 ORTHO05D005403 1.5e-12 78.2 100 51.0
Migut.B01860 Erythranthe guttata HOM05D004310 ORTHO05D005403 2.1e-11 74.3 257 36.2
arahy.Tifrunner.gnm1.ann1.5IVJ41 Arachis hypogaea HOM05D004310 ORTHO05D005403 5.4e-07 59.7 73 47.9
MBI13_g41012_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 7.1e-07 59.3 109 48.6
ECA236G4521 Erigeron canadensis HOM05D000218 ORTHO05D000125 9.3e-07 58.9 121 36.4
EL10Ac7g16893 Beta vulgaris HOM05D000218 ORTHO05D000125 1.6e-06 58.2 120 36.7
Potri.004G194000 Populus trichocarpa HOM05D000218 ORTHO05D000125 2.7e-06 57.4 78 41.0
AUR62037012 Chenopodium quinoa HOM05D000218 ORTHO05D000125 3.5e-06 57.0 77 42.9
ATR0721G179 Amborella trichopoda HOM05D004310 ORTHO05D005403 6.0e-06 56.2 132 39.4


User provided reference genes

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