Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.5e-54 215.3 116 100.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.7e-42 176.0 113 84.1
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.2e-26 120.6 111 67.6
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.5e-24 115.2 98 68.4
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.3e-23 113.2 109 66.1
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.3e-20 102.4 98 64.3
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.0e-20 101.7 107 58.9
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 8.8e-20 100.5 105 59.0
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.0e-19 99.4 114 58.8
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.3e-18 96.7 104 59.6
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-18 95.9 104 57.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 8.3e-18 94.0 98 57.1
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.1e-17 93.6 105 56.2
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.1e-17 90.5 104 56.7
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.6e-16 89.7 104 56.7
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-16 89.7 104 56.7
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-16 89.7 104 56.7
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.5e-16 88.6 105 54.3
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 4.5e-16 88.2 97 54.6
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.0e-15 87.0 89 58.4
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.0e-15 87.0 108 56.5
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 3.8e-15 85.1 99 53.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.8e-15 85.1 105 57.1
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.8e-15 85.1 98 57.1
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 8.5e-15 84.0 110 56.4
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.2e-14 81.6 99 54.5
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.2e-14 81.6 99 53.5
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.2e-14 81.6 104 54.8
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 4.2e-14 81.6 101 55.4
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 9.4e-14 80.5 100 51.0
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 9.4e-14 80.5 118 48.3
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.2e-13 80.1 98 54.1
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.2e-13 80.1 99 55.6
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.6e-13 79.7 103 52.4
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.1e-13 79.3 86 60.5
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 2.1e-13 79.3 104 51.0
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.1e-13 79.3 89 57.3
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.7e-13 79.0 110 50.0
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.6e-13 78.6 102 49.0
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.6e-13 78.6 103 52.4
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 3.6e-13 78.6 106 49.1
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 6.1e-13 77.8 103 52.4
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.1e-13 77.8 103 48.5
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 8.0e-13 77.4 89 52.8
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.0e-12 77.0 103 47.6
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.0e-12 77.0 89 56.2
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 1.4e-12 76.6 102 50.0
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.8e-12 76.3 104 51.9
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.8e-12 76.3 90 60.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.3e-12 75.9 77 61.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 2.3e-12 75.9 117 50.4
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.3e-12 75.9 104 50.0
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.3e-12 75.9 83 61.4
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.0e-12 75.5 105 52.4
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 4.0e-12 75.1 77 62.3
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 4.0e-12 75.1 115 53.9
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 6.8e-12 74.3 103 52.4
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.8e-12 74.3 102 51.0
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.8e-12 74.3 107 45.8
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.8e-12 74.3 119 52.1
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 8.8e-12 73.9 75 61.3
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 8.8e-12 73.9 75 61.3
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 8.8e-12 73.9 75 61.3
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 8.8e-12 73.9 69 63.8
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 8.8e-12 73.9 98 48.0
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 8.8e-12 73.9 100 51.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 8.8e-12 73.9 94 53.2
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.2e-11 73.6 83 60.2
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.2e-11 73.6 98 50.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-11 73.2 116 50.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.5e-11 73.2 100 48.0
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.0e-11 72.8 104 48.1
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.0e-11 72.8 103 49.5
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.6e-11 72.4 100 50.0
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.4e-11 72.0 75 60.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.4e-11 72.0 75 60.0
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.4e-11 71.6 112 46.4
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 5.7e-11 71.2 116 49.1
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.7e-11 71.2 100 48.0
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 5.7e-11 71.2 100 47.0
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 7.5e-11 70.9 75 60.0
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 7.5e-11 70.9 65 64.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 7.5e-11 70.9 117 45.3
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 9.8e-11 70.5 108 47.2
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 9.8e-11 70.5 98 46.9
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 9.8e-11 70.5 115 47.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 9.8e-11 70.5 100 50.0
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.3e-10 70.1 99 48.5
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.3e-10 70.1 69 62.3
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.7e-10 69.7 69 63.8
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.7e-10 69.7 69 60.9
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.2e-10 69.3 98 49.0
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.2e-10 69.3 86 52.3
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-10 69.3 75 57.3
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.2e-10 69.3 117 42.7
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.8e-10 68.9 98 51.0
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.8e-10 68.9 105 44.8
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 2.8e-10 68.9 98 51.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.8e-10 68.9 114 45.6
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.7e-10 68.6 75 56.0
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.7e-10 68.6 98 43.9
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 3.7e-10 68.6 103 47.6
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 3.7e-10 68.6 97 50.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.8e-10 68.2 103 46.6
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.8e-10 68.2 104 46.2
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 4.8e-10 68.2 88 52.3
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 6.3e-10 67.8 106 50.0
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 6.3e-10 67.8 75 56.0
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 6.3e-10 67.8 75 56.0
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 6.3e-10 67.8 75 56.0
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 6.3e-10 67.8 115 45.2
Nitab4.5_0011654g0010 Nicotiana tabacum HOM05D003683 ORTHO05D004143 6.3e-10 67.8 106 45.3
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.3e-10 67.8 98 49.0
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 8.3e-10 67.4 97 48.5
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 8.3e-10 67.4 97 48.5
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-09 67.0 99 48.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-09 66.6 69 58.0
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.8e-09 66.2 87 49.4
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.8e-09 66.2 89 50.6
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.4e-09 65.9 105 49.5
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 2.4e-09 65.9 98 42.9
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 2.4e-09 65.9 95 49.5
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 3.1e-09 65.5 70 58.6
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.1e-09 65.5 103 43.7
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-09 64.7 69 55.1
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-09 64.7 69 55.1
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 5.4e-09 64.7 69 55.1
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.4e-09 64.7 99 48.5
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 7.0e-09 64.3 44 72.7
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 7.0e-09 64.3 103 42.7
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 9.1e-09 63.9 98 46.9
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 9.1e-09 63.9 102 46.1
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.2e-08 63.5 103 43.7
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.6e-08 63.2 105 47.6
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.6e-08 63.2 102 47.1
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.0e-08 62.8 113 42.5
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 2.0e-08 62.8 100 44.0
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 3.5e-08 62.0 78 52.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 3.5e-08 62.0 120 42.5
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.5e-08 62.0 99 41.4
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.5e-08 62.0 76 56.6
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 4.5e-08 61.6 97 42.3
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 4.5e-08 61.6 100 45.0
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 4.5e-08 61.6 101 42.6
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.9e-08 61.2 78 51.3
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 5.9e-08 61.2 98 40.8
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 7.7e-08 60.8 97 46.4
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 7.7e-08 60.8 102 45.1
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 7.7e-08 60.8 112 42.9
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.0e-07 60.5 44 75.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-07 60.1 100 47.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.7e-07 59.7 83 48.2
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.7e-07 59.7 96 45.8
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-07 58.5 107 43.0
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 6.6e-07 57.8 74 56.8
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 6.6e-07 57.8 98 43.9
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 6.6e-07 57.8 63 54.0
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 8.6e-07 57.4 39 76.9
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 107 43.0
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.5e-06 56.6 83 44.6
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.5e-06 56.6 104 41.3
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 1.9e-06 56.2 43 65.1
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 1.9e-06 56.2 43 65.1
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.3e-06 55.5 83 45.8
arahy.Tifrunner.gnm1.ann1.1L371M Arachis hypogaea HOM05D003683 ORTHO05D004143 5.5e-06 54.7 98 39.8
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 5.5e-06 54.7 114 39.5
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 7.2e-06 54.3 74 45.9
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 7.2e-06 54.3 74 44.6
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 7.2e-06 54.3 86 46.5
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.5e-06 53.9 77 46.8


User provided reference genes

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