Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 2.3e-51 205.3 104 100.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 8.1e-41 170.2 102 81.4
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.6e-36 156.0 104 74.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.2e-33 144.1 101 71.3
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 2.9e-30 135.2 93 68.8
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.4e-29 132.9 102 69.6
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 1.6e-28 129.4 100 64.0
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.3e-27 126.3 116 62.9
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.0e-27 125.2 102 63.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 5.1e-27 124.4 100 66.0
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 6.7e-27 124.0 94 68.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.5e-26 122.1 101 61.4
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 3.3e-26 121.7 104 61.5
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 4.3e-26 121.3 92 73.9
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.6e-25 119.4 83 68.7
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.1e-25 119.0 99 71.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 8.2e-25 117.1 102 60.8
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.1e-24 114.8 87 63.2
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 6.9e-24 114.0 90 68.9
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.0e-24 113.6 101 61.4
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.2e-23 113.2 87 66.7
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-23 112.8 101 63.4
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.6e-23 112.1 94 61.7
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.4e-23 111.7 101 63.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.4e-23 111.7 118 57.6
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.4e-23 111.7 95 64.2
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 5.8e-23 110.9 98 57.1
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 7.6e-23 110.5 101 62.4
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.0e-22 110.2 101 57.4
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.0e-22 110.2 99 60.6
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.3e-22 109.8 122 52.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.7e-22 109.4 111 60.4
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.2e-22 109.0 101 58.4
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 3.8e-22 108.2 109 59.6
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 6.5e-22 107.5 96 63.5
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 8.4e-22 107.1 101 57.4
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 8.4e-22 107.1 97 60.8
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-21 106.7 95 62.1
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.1e-21 106.7 83 62.7
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.9e-21 105.9 81 66.7
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.5e-21 105.5 62 74.2
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.5e-21 105.5 88 64.8
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.5e-21 105.5 93 62.4
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.5e-21 105.5 103 54.4
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 4.2e-21 104.8 78 61.5
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 5.5e-21 104.4 84 66.7
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 7.2e-21 104.0 92 62.0
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 9.3e-21 103.6 105 58.1
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.2e-20 103.2 105 56.2
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.2e-20 103.2 111 59.5
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.6e-20 102.8 114 56.1
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 4.6e-20 101.3 77 62.3
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 6.1e-20 100.9 110 52.7
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.3e-19 99.0 113 56.6
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.0e-19 98.6 82 58.5
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 3.0e-19 98.6 106 51.9
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 3.9e-19 98.2 96 57.3
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 3.9e-19 98.2 88 61.4
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.7e-19 97.4 84 61.9
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 8.7e-19 97.1 76 64.5
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-18 96.7 73 61.6
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.5e-18 96.3 113 55.8
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.3e-18 95.1 84 57.1
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 4.3e-18 94.7 103 51.5
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 4.3e-18 94.7 95 56.8
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 4.3e-18 94.7 103 49.5
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 4.3e-18 94.7 103 49.5
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 4.3e-18 94.7 79 63.3
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 7.4e-18 94.0 81 60.5
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.3e-17 93.2 83 56.6
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.3e-17 93.2 97 49.5
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.3e-17 93.2 97 49.5
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 2.2e-17 92.4 105 55.2
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.3e-17 90.9 88 60.2
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 6.3e-17 90.9 99 53.5
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 8.2e-17 90.5 98 48.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.1e-16 90.1 86 51.2
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-16 90.1 103 51.5
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.1e-16 90.1 107 46.7
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.4e-16 89.7 104 51.9
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.8e-16 89.4 99 53.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.8e-16 89.4 100 52.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.8e-16 89.4 83 59.0
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.4e-16 89.0 83 60.2
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.4e-16 89.0 94 57.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 3.1e-16 88.6 103 49.5
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 3.1e-16 88.6 104 46.2
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.1e-16 88.2 97 48.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.1e-16 88.2 97 51.5
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 5.3e-16 87.8 103 47.6
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.9e-16 87.4 73 61.6
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.2e-15 86.7 84 61.9
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-15 86.7 82 65.9
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.5e-15 86.3 108 46.3
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.6e-15 85.5 95 49.5
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.6e-15 85.5 95 49.5
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.6e-15 85.5 103 50.5
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.4e-15 85.1 103 51.5
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.4e-15 85.1 98 52.0
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 4.5e-15 84.7 105 50.5
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 4.5e-15 84.7 104 49.0
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.9e-15 84.3 82 64.6
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 7.7e-15 84.0 98 49.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 7.7e-15 84.0 91 52.7
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.0e-14 83.6 86 55.8
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.3e-14 83.2 92 53.3
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.7e-14 82.8 108 51.9
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 2.2e-14 82.4 93 48.4
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-14 82.4 95 48.4
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.9e-14 82.0 81 58.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 5.0e-14 81.3 103 51.5
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 6.5e-14 80.9 86 47.7
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.1e-13 80.1 90 47.8
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.1e-13 80.1 93 49.5
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.1e-13 80.1 93 49.5
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-13 80.1 86 53.5
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.4e-13 79.7 92 51.1
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.4e-13 79.7 93 52.7
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.4e-13 79.7 55 60.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.9e-13 79.3 66 62.1
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.5e-13 79.0 96 46.9
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 3.2e-13 78.6 80 53.8
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 3.2e-13 78.6 84 50.0
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.2e-13 78.2 100 49.0
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 5.5e-13 77.8 86 46.5
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 7.2e-13 77.4 84 46.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 9.4e-13 77.0 80 53.8
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 9.4e-13 77.0 80 53.8
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.1e-12 75.9 81 49.4
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.1e-12 75.9 86 52.3
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 3.6e-12 75.1 79 54.4
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 3.6e-12 75.1 80 52.5
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 3.6e-12 75.1 74 51.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.6e-12 75.1 87 48.3
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.4e-11 73.2 63 55.6
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.1e-10 70.1 60 61.7
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.0e-10 69.3 47 72.3
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.5e-10 68.9 99 47.5
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.5e-10 68.9 88 51.1
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 3.3e-10 68.6 88 47.7
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 9.7e-10 67.0 88 48.9
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.7e-09 65.1 53 67.9
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.8e-08 62.8 76 47.4
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 6.9e-08 60.8 74 51.4
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.2e-07 60.1 76 51.3
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.5e-07 59.7 55 65.5
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.6e-07 58.9 66 53.0
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 3.8e-06 55.1 54 55.6
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.8e-06 55.1 60 50.0


User provided reference genes

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