Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 7.0e-119 430.6 218 100.0
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.9e-101 371.7 219 84.9
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 4.0e-98 361.7 217 81.1
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.2e-97 360.1 219 83.1
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 7.5e-97 357.5 216 83.3
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.2e-96 355.9 217 81.6
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 8.3e-96 354.0 217 81.6
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 3.2e-95 352.1 218 81.7
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 4.1e-95 351.7 217 79.7
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.7e-94 349.0 216 80.1
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 3.5e-94 348.6 223 78.9
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.8e-94 347.4 215 80.0
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.0e-93 347.1 225 80.4
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.0e-93 347.1 215 79.5
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.0e-93 347.1 215 80.0
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 3.9e-93 345.1 217 79.7
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 5.0e-93 344.7 217 77.4
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 8.6e-93 344.0 216 77.8
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 3.3e-92 342.0 247 72.9
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.3e-92 342.0 216 79.2
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.6e-92 341.3 221 78.7
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 5.6e-92 341.3 218 78.4
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 9.5e-92 340.5 206 83.5
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 9.5e-92 340.5 218 77.5
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 9.5e-92 340.5 216 77.3
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.6e-91 339.7 215 78.1
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 3.6e-91 338.6 217 78.3
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 4.7e-91 338.2 219 77.2
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 8.1e-91 337.4 217 76.5
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 8.1e-91 337.4 221 78.3
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.1e-90 337.0 224 78.1
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.4e-90 336.7 217 78.3
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.4e-90 336.7 216 77.3
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.3e-90 335.9 216 76.4
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 4.0e-90 335.1 217 74.7
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 5.2e-90 334.7 214 78.5
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 6.8e-90 334.3 217 77.0
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 8.9e-90 334.0 223 78.0
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.2e-89 333.6 213 75.6
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.2e-89 333.6 227 74.0
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.5e-89 333.2 217 78.3
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.5e-89 333.2 219 76.7
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 2.6e-89 332.4 217 76.0
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 2.6e-89 332.4 217 76.0
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 3.4e-89 332.0 216 75.0
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 5.8e-89 331.3 223 74.9
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.3e-88 330.1 216 76.4
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 2.2e-88 329.3 219 74.4
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 4.9e-88 328.2 216 74.5
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 8.3e-88 327.4 224 76.3
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 8.3e-88 327.4 217 73.7
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.1e-87 327.0 216 76.4
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.9e-87 326.2 218 75.2
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 3.2e-87 325.5 217 75.1
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 4.1e-87 325.1 225 72.0
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 5.4e-87 324.7 220 74.1
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 7.1e-87 324.3 217 74.7
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 9.2e-87 323.9 257 68.5
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.2e-86 323.6 217 75.1
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.1e-86 322.8 213 75.1
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.7e-86 322.4 219 72.6
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.7e-86 322.4 218 76.1
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 2.7e-86 322.4 216 73.6
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 6.0e-86 321.2 218 74.3
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 6.0e-86 321.2 218 73.9
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 6.0e-86 321.2 220 74.5
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.3e-85 320.1 224 71.0
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.3e-85 320.1 220 74.1
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 2.3e-85 319.3 217 75.1
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 3.9e-85 318.5 225 70.2
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.1e-85 318.2 224 74.6
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 8.6e-85 317.4 220 69.1
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.1e-84 317.0 227 73.1
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.1e-84 317.0 237 69.6
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.1e-84 317.0 222 72.5
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 1.9e-84 316.2 220 68.2
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 1.9e-84 316.2 220 68.2
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.9e-84 316.2 261 62.5
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 2.5e-84 315.8 219 73.1
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 5.6e-84 314.7 225 72.4
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 5.6e-84 314.7 220 69.1
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 7.3e-84 314.3 220 67.7
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 9.5e-84 313.9 218 72.0
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 9.5e-84 313.9 218 72.0
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 9.5e-84 313.9 220 67.7
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.2e-83 313.5 216 69.9
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 3.6e-83 312.0 219 67.6
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 3.6e-83 312.0 219 67.6
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 3.6e-83 312.0 224 71.4
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 3.6e-83 312.0 215 74.0
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.1e-82 310.5 219 71.7
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.4e-82 310.1 221 68.3
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 3.1e-82 308.9 220 66.4
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 3.1e-82 308.9 243 67.1
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 8.9e-82 307.4 218 68.8
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 5.8e-81 304.7 217 67.7
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 9.9e-81 303.9 210 74.8
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.8e-80 302.0 180 82.8
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 3.8e-80 302.0 219 68.5
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 6.4e-80 301.2 188 79.3
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.1e-79 300.4 225 67.1
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 4.1e-79 298.5 231 64.1
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.2e-78 297.0 220 65.5
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.7e-77 293.1 219 65.8
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.9e-77 292.0 213 70.9
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.1e-76 290.4 250 62.8
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 5.6e-76 288.1 214 67.3
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 3.6e-75 285.4 202 69.3
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.1e-74 283.9 158 85.4
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.8e-74 283.1 210 70.0
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.5e-73 280.0 220 62.7
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.2e-72 276.2 182 75.8
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.0e-69 267.3 191 72.8
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 3.9e-69 265.4 220 63.6
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.6e-67 260.0 218 62.8
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 3.9e-61 238.8 221 61.5
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.3e-59 233.8 121 89.3
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 3.1e-58 229.2 132 78.8
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 4.5e-57 225.3 238 50.8
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 5.8e-57 224.9 217 53.9
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 1.1e-52 210.7 114 85.1
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 2.8e-51 206.1 245 47.8
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.6e-49 199.5 235 48.1
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 3.8e-48 195.7 208 50.5
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.7e-43 179.1 171 56.1
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.4e-42 176.4 100 85.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 2.8e-35 152.9 251 37.5
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 9.1e-34 147.9 178 48.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 4.6e-30 135.6 246 38.6
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.7e-14 83.2 42 90.5
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 2.7e-14 83.2 84 54.8
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.3e-12 76.3 43 83.7
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 5.3e-10 68.9 38 81.6
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.2e-09 67.8 36 80.6
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 8.5e-08 61.6 44 68.2
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 2.5e-07 60.1 37 78.4
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 3.2e-07 59.7 38 78.9
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 1.6e-06 57.4 41 70.7
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.7e-06 56.6 28 89.3
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 3.6e-06 56.2 215 22.8
TPR.G6657 Trifolium pratense HOM05D001916 ORTHO05D003272 3.6e-06 56.2 162 24.7


User provided reference genes

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