Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 2.6e-71 271.9 137 100.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.4e-19 100.1 86 62.8
Dinv07006 Davidia involucrata HOM05D007975 ORTHO05D010011 4.0e-19 98.6 51 98.0
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 2.0e-18 96.3 110 46.4
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 4.8e-17 91.7 100 48.0
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 6.3e-17 91.3 98 51.0
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 9.1e-16 87.4 94 55.3
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 2.7e-15 85.9 105 47.6
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 2.2e-14 82.8 86 51.2
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 2.9e-14 82.4 108 49.1
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 2.9e-14 82.4 114 43.0
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 1.1e-13 80.5 111 39.6
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.5e-13 79.3 100 45.0
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 4.2e-13 78.6 100 45.0
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 4.2e-13 78.6 100 44.0
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.2e-12 77.0 100 43.0
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.1e-12 74.7 105 41.9
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 1.4e-11 73.6 99 42.4
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.3e-11 72.8 105 41.0
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.3e-11 72.8 105 41.0
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 4.0e-11 72.0 94 52.1
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 6.8e-11 71.2 133 40.6
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 6.8e-11 71.2 85 50.6
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 6.8e-11 71.2 94 52.1
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 8.8e-11 70.9 92 47.8
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.5e-10 70.1 90 48.9
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.5e-10 70.1 90 48.9
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 2.0e-10 69.7 82 52.4
Cpa.g.sc17.10 Carica papaya HOM05D004022 ORTHO05D004090 2.6e-10 69.3 108 40.7
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 3.4e-10 68.9 88 48.9
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 3.4e-10 68.9 85 51.8
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 5.7e-10 68.2 117 39.3
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 7.5e-10 67.8 102 41.2
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 7.5e-10 67.8 97 46.4
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 7.5e-10 67.8 86 50.0
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.7e-09 66.6 102 46.1
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 1.7e-09 66.6 96 44.8
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 3.7e-09 65.5 88 47.7
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 3.7e-09 65.5 106 41.5
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.8e-09 65.1 85 47.1
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 6.3e-09 64.7 97 44.3
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 8.3e-09 64.3 82 46.3
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 8.3e-09 64.3 85 47.1
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 8.3e-09 64.3 86 50.0
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.1e-08 63.9 80 45.0
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.4e-08 63.5 92 47.8
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.4e-08 63.5 92 47.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.8e-08 63.2 85 45.9
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 2.4e-08 62.8 135 37.0
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 2.4e-08 62.8 84 47.6
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 4.1e-08 62.0 87 48.3
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 4.1e-08 62.0 103 37.9
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 5.4e-08 61.6 76 48.7
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 5.4e-08 61.6 104 39.4
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 5.4e-08 61.6 103 39.8
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 7.0e-08 61.2 103 38.8
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 9.1e-08 60.8 118 36.4
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.2e-07 60.5 113 37.2
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.2e-07 60.5 89 44.9
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.2e-07 60.5 108 42.6
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 1.6e-07 60.1 102 39.2
Sed0018028 Sechium edule HOM05D024889 ORTHO05D004090 1.6e-07 60.1 87 42.5
MELO3C007129.2 Cucumis melo HOM05D024889 ORTHO05D004090 3.5e-07 58.9 94 42.6
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.5e-07 58.9 94 40.4
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 3.5e-07 58.9 98 38.8
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.5e-07 58.9 82 42.7
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 4.5e-07 58.5 79 44.3
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.5e-07 58.5 88 43.2
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 4.5e-07 58.5 110 37.3
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 5.9e-07 58.2 106 34.9
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 5.9e-07 58.2 98 37.8
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 5.9e-07 58.2 95 38.9
arahy.Tifrunner.gnm1.ann1.SH745U Arachis hypogaea HOM05D012904 ORTHO05D004090 7.7e-07 57.8 102 38.2
CsaV3_6G051770 Cucumis sativus L. HOM05D024889 ORTHO05D004090 7.7e-07 57.8 123 35.8
Phvul.006G165200 Phaseolus vulgaris HOM05D012904 ORTHO05D004090 1.0e-06 57.4 108 36.1
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.0e-06 57.4 101 38.6
ClCG01G024660 Citrullus lanatus HOM05D024889 ORTHO05D004090 1.3e-06 57.0 86 39.5
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.7e-06 56.6 86 44.2
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 1.7e-06 56.6 104 41.3
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 1.7e-06 56.6 100 37.0
TPR.G26259 Trifolium pratense HOM05D012904 ORTHO05D004090 1.7e-06 56.6 100 37.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 2.9e-06 55.8 86 40.7
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 2.9e-06 55.8 77 45.5
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 2.9e-06 55.8 93 44.1
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.9e-06 55.8 93 38.7
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.9e-06 55.8 95 38.9
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.8e-06 55.5 93 38.7
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.8e-06 55.5 102 33.3
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 3.8e-06 55.5 92 39.1
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 3.8e-06 55.5 93 38.7
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 3.8e-06 55.5 95 40.0
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 6.6e-06 54.7 96 38.5
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 6.6e-06 54.7 86 39.5
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 6.6e-06 54.7 94 39.4
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 6.6e-06 54.7 94 41.5
Dinv23298 Davidia involucrata HOM05D001271 ORTHO05D001115 6.6e-06 54.7 28 100.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 6.6e-06 54.7 97 39.2
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 6.6e-06 54.7 97 36.1
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 6.6e-06 54.7 93 40.9
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 8.6e-06 54.3 95 35.8
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 8.6e-06 54.3 95 35.8
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 8.6e-06 54.3 95 35.8
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 8.6e-06 54.3 95 35.8
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 8.6e-06 54.3 88 39.8
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.6e-06 54.3 109 33.9
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 8.6e-06 54.3 85 38.8


User provided reference genes

Program Settings