Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.8e-116 422.5 206 100.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 5.4e-105 384.4 206 89.3
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 6.4e-98 360.9 207 84.5
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 8.4e-98 360.5 204 85.3
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.1e-95 351.3 206 80.1
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 5.1e-95 351.3 207 82.1
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.5e-94 349.0 206 80.1
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 5.6e-94 347.8 206 82.0
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.8e-93 344.7 206 78.6
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 4.0e-92 341.7 207 79.2
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 6.9e-92 340.9 206 79.1
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.9e-92 340.9 205 78.5
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.6e-91 339.0 206 80.1
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 5.8e-91 337.8 207 80.2
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 5.8e-91 337.8 206 77.7
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 9.9e-91 337.0 206 79.6
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 9.9e-91 337.0 207 79.7
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.9e-90 335.5 206 76.2
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.8e-90 335.1 228 71.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.8e-90 335.1 206 78.2
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 6.4e-90 334.3 205 79.0
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 6.4e-90 334.3 206 76.2
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 8.4e-90 334.0 206 78.2
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.1e-89 333.6 206 75.7
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-89 333.6 206 77.2
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.4e-89 333.2 207 78.7
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.4e-89 332.4 206 77.2
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 4.2e-89 331.6 206 78.2
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 4.2e-89 331.6 206 78.2
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 4.2e-89 331.6 206 78.2
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 5.5e-89 331.3 208 78.8
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.1e-89 330.9 206 77.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.2e-88 330.1 205 75.6
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.2e-88 330.1 207 79.2
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.7e-88 328.9 205 76.6
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 3.5e-88 328.6 206 76.7
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 3.5e-88 328.6 206 78.2
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 6.0e-88 327.8 207 77.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.9e-88 327.4 206 77.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 7.9e-88 327.4 207 78.3
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.0e-87 327.0 206 78.6
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 6.7e-87 324.3 205 75.6
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 8.7e-87 323.9 207 76.3
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.9e-86 322.8 206 75.7
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 4.3e-86 321.6 204 75.5
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.6e-86 321.2 206 75.2
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 5.6e-86 321.2 205 74.1
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 7.4e-86 320.9 206 75.2
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 3.7e-85 318.5 204 73.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 6.2e-85 317.8 206 72.3
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 6.2e-85 317.8 206 74.3
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.4e-84 316.6 206 75.7
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.4e-84 316.6 206 77.2
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.4e-84 316.6 206 74.8
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.4e-84 315.8 203 74.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.4e-84 315.8 206 75.7
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 3.1e-84 315.5 204 76.0
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.2e-83 313.5 204 76.5
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.0e-83 312.8 205 74.6
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.4e-83 312.0 197 77.2
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 5.8e-83 311.2 207 70.5
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.3e-82 310.1 204 70.6
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.7e-82 309.7 198 74.7
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 2.2e-82 309.3 204 72.1
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 3.8e-82 308.5 204 71.1
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 3.8e-82 308.5 204 71.1
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 3.8e-82 308.5 204 70.6
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.8e-82 308.5 207 70.0
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.9e-82 308.1 258 61.2
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 8.4e-82 307.4 207 73.9
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.1e-81 307.0 202 73.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.9e-81 306.2 204 70.1
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.9e-81 306.2 206 70.4
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.5e-81 305.8 194 75.8
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 2.5e-81 305.8 205 74.1
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.5e-81 305.8 203 71.4
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.5e-81 305.8 209 72.2
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-81 305.4 204 70.6
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 5.5e-81 304.7 202 72.8
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.6e-80 303.1 204 70.1
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.1e-80 302.8 204 70.1
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.1e-80 302.8 203 71.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.1e-80 302.8 204 70.1
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 2.1e-80 302.8 204 70.1
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 68.6
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 68.6
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 70.6
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 69.6
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.6e-80 301.6 206 72.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 4.6e-80 301.6 205 68.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 6.0e-80 301.2 203 70.4
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.0e-80 301.2 206 72.3
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 6.0e-80 301.2 206 73.8
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 70.1
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 70.1
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 70.1
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.0e-79 300.4 208 73.6
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.8e-79 299.7 209 69.4
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 70.0
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 69.5
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 3.9e-79 298.5 204 69.6
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 5.1e-79 298.1 202 71.8
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 6.7e-79 297.7 204 68.6
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 6.7e-79 297.7 204 68.6
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 8.7e-79 297.4 203 70.0
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.1e-78 297.0 202 70.3
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.9e-78 296.2 204 69.1
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.3e-78 295.4 204 68.6
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 70.0
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 5.7e-78 294.7 204 70.1
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 9.7e-78 293.9 206 68.0
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 6.3e-77 291.2 204 70.6
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 8.2e-77 290.8 204 70.1
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.9e-76 287.7 214 64.5
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 9.3e-73 277.3 204 60.8
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.3e-69 266.9 207 61.8
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 4.8e-69 265.0 207 64.7
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 5.3e-68 261.5 195 65.1
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 2.1e-64 249.6 208 58.7
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.6e-62 242.7 154 77.9
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 3.7e-61 238.8 206 62.6
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 2.4e-60 236.1 214 55.6
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 6.9e-60 234.6 210 56.2
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.2e-58 229.6 210 56.2
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.2e-57 225.7 143 79.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.9e-56 221.1 141 77.3
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.1e-54 217.2 138 75.4
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.5e-54 216.9 149 70.5
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-49 200.3 150 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 7.2e-49 198.0 206 50.0
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.1e-48 196.4 150 65.3
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.6e-43 180.3 129 66.7
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.5e-43 179.1 183 55.2
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 1.2e-30 137.5 195 41.5
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.1e-28 129.0 137 51.8
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 5.4e-28 128.6 194 37.1
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 5.9e-27 125.2 100 62.0
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 7.8e-27 124.8 128 49.2
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.0e-26 122.1 77 70.1
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 3.6e-24 115.9 201 36.8
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.0e-24 114.8 66 78.8
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 4.4e-22 109.0 69 73.9
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.4e-20 104.0 71 74.6
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.5e-14 84.0 50 76.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 4.4e-14 82.4 64 64.1
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 5.4e-12 75.5 114 38.6
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.7e-10 70.5 51 66.7
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.7e-10 70.5 51 66.7
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.5e-09 67.4 71 54.9
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 1.9e-09 67.0 43 67.4
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.6e-09 65.5 67 49.3
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 6.8e-07 58.5 81 39.5


User provided reference genes

Program Settings