Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 7.8e-118 427.2 219 100.0
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 3.9e-77 292.0 223 70.4
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 1.1e-68 263.8 223 65.5
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.5e-65 253.4 220 61.8
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 3.4e-65 252.3 210 66.7
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 2.9e-64 249.2 219 63.5
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 2.5e-63 246.1 197 66.0
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 7.1e-63 244.6 219 62.6
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 7.1e-63 244.6 221 60.2
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.7e-62 242.7 207 63.8
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 7.9e-62 241.1 222 61.3
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 3.0e-61 239.2 212 61.3
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.1e-60 237.3 220 62.3
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.5e-60 236.1 222 59.0
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 7.4e-60 234.6 220 62.7
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 6.9e-58 228.0 218 60.6
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 6.9e-58 228.0 226 58.4
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 1.2e-57 227.3 232 58.2
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.0e-56 224.2 224 61.2
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.3e-56 223.8 213 61.5
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.3e-56 223.8 223 57.0
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 2.2e-56 223.0 212 60.4
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 2.9e-56 222.6 228 57.0
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 8.5e-56 221.1 212 59.4
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.4e-55 220.3 219 59.8
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.4e-55 220.3 219 59.8
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 7.2e-55 218.0 191 63.4
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 9.3e-55 217.6 229 54.1
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.6e-54 216.9 189 61.4
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.1e-54 216.5 231 55.0
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 6.1e-54 214.9 218 58.7
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 6.1e-54 214.9 188 62.8
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 7.9e-54 214.5 205 56.6
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 3.0e-53 212.6 141 73.0
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 1.9e-52 209.9 159 70.4
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 4.3e-52 208.8 159 69.8
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 1.3e-51 207.2 174 62.1
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 1.6e-51 206.8 226 50.9
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 1.6e-51 206.8 226 50.9
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 2.8e-51 206.1 167 62.3
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 3.7e-51 205.7 219 55.3
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 1.4e-50 203.8 228 50.9
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 6.9e-50 201.4 157 61.1
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.0e-49 199.9 233 52.4
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 3.4e-49 199.1 187 60.4
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 7.7e-49 198.0 199 57.3
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 1.3e-48 197.2 189 56.6
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 2.2e-48 196.4 134 74.6
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 1.9e-47 193.4 207 57.0
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.6e-46 190.3 187 54.0
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 4.6e-46 188.7 207 54.1
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.0e-45 187.6 215 52.1
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 1.0e-45 187.6 132 69.7
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 1.4e-45 187.2 127 71.7
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 2.3e-45 186.4 153 64.7
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 2.3e-45 186.4 213 51.6
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 6.7e-45 184.9 214 51.4
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 6.7e-45 184.9 204 55.4
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 8.8e-45 184.5 198 52.5
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 1.5e-44 183.7 210 50.5
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 1.5e-44 183.7 210 50.5
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.3e-43 180.6 217 49.8
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 1.7e-43 180.3 203 51.2
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.7e-43 180.3 209 51.2
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 4.8e-43 178.7 149 59.7
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 8.2e-43 177.9 214 52.3
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.1e-42 177.6 189 49.2
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 4.1e-42 175.6 200 52.0
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 1.0e-40 171.0 163 56.4
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.0e-40 171.0 146 60.3
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 1.7e-40 170.2 194 50.0
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 2.9e-40 169.5 222 50.9
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 8.5e-40 167.9 177 51.4
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.4e-39 167.2 213 47.9
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.9e-39 166.8 209 46.4
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 2.5e-39 166.4 217 47.9
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 4.2e-39 165.6 207 46.4
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 5.5e-39 165.2 146 56.8
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 5.5e-39 165.2 146 56.8
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 7.2e-39 164.9 138 60.1
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 7.2e-39 164.9 138 60.1
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 3.6e-38 162.5 131 62.6
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 7.9e-38 161.4 114 66.7
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 7.9e-38 161.4 192 47.4
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 1.8e-37 160.2 169 50.9
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.8e-37 160.2 207 44.4
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 3.9e-37 159.1 162 51.9
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 5.2e-37 158.7 132 62.1
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 8.8e-37 157.9 99 75.8
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 8.8e-37 157.9 220 43.6
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 1.1e-36 157.5 126 57.9
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 1.5e-36 157.1 208 45.2
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.5e-36 157.1 131 58.0
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 9.7e-36 154.5 135 53.3
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.4e-34 149.8 196 44.9
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 4.5e-33 145.6 197 43.7
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 3.2e-31 139.4 139 57.6
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 3.2e-31 139.4 235 40.9
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 6.1e-30 135.2 145 46.9
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 5.2e-29 132.1 295 36.3
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 5.2e-29 132.1 205 42.9
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 4.8e-27 125.6 178 44.9
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 4.5e-25 119.0 182 41.2
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 4.2e-23 112.5 126 51.6
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 1.0e-21 107.8 73 68.5
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 3.7e-19 99.4 200 35.5
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.7e-16 90.5 114 40.4
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 6.8e-13 78.6 108 41.7
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.2e-12 77.8 56 69.6
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 6.3e-11 72.0 109 35.8
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 3.8e-08 62.8 126 34.1
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 4.3e-07 59.3 130 32.3
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 5.6e-07 58.9 129 31.8
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 3.6e-06 56.2 130 32.3
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 6.1e-06 55.5 130 32.3
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 6.1e-06 55.5 130 31.5
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 6.1e-06 55.5 130 30.8
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 8.0e-06 55.1 99 35.4


User provided reference genes

Program Settings