Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32077 Davidia involucrata HOM05D000005 ORTHO05D001748 1.2e-126 456.4 218 100.0
Dinv16235 Davidia involucrata HOM05D000005 ORTHO05D001748 1.2e-33 147.5 215 45.6
Dinv16233 Davidia involucrata HOM05D000005 ORTHO05D001748 1.5e-33 147.1 175 50.9
Dinv16238 Davidia involucrata HOM05D000005 ORTHO05D001748 4.2e-31 139.0 185 50.8
Dinv32080 Davidia involucrata HOM05D000005 ORTHO05D001748 7.7e-25 118.2 138 47.8
Gorai.007G319000 Gossypium raimondii HOM05D000005 ORTHO05D000012 4.8e-11 72.4 76 47.4
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 6.3e-11 72.0 215 27.4
QL01p031834 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-10 71.2 161 33.5
Gohir.D11G295500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.4e-10 70.9 74 48.6
Gohir.D11G296000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.4e-10 70.9 76 47.4
THA.LOC104812399 Tarenaya hassleriana HOM05D000005 ORTHO05D000012 2.4e-10 70.1 70 47.1
Gohir.D11G295266 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.1e-10 69.3 76 47.4
Gorai.007G318700 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.3e-10 68.9 76 47.4
CSS0028532 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D001748 1.6e-09 67.4 81 43.2
TPR.G19261 Trifolium pratense HOM05D000005 ORTHO05D000012 1.6e-09 67.4 74 48.6
MD07G1242100 Malus domestica HOM05D000005 ORTHO05D000012 2.7e-09 66.6 76 47.4
QL03p068827 Quercus lobata HOM05D000005 ORTHO05D000012 2.7e-09 66.6 157 32.5
QL07p003457 Quercus lobata HOM05D000005 ORTHO05D000012 3.5e-09 66.2 73 47.9
GSVIVG01037226001 Vitis vinifera HOM05D000005 ORTHO05D011281 3.5e-09 66.2 73 46.6
QL06p046879 Quercus lobata HOM05D000005 ORTHO05D000012 4.5e-09 65.9 73 47.9
GSVIVG01037222001 Vitis vinifera HOM05D000005 ORTHO05D011281 4.5e-09 65.9 73 46.6
MD07G1243500 Malus domestica HOM05D000005 ORTHO05D000012 5.9e-09 65.5 76 47.4
Prupe.8G034500 Prunus persica HOM05D000005 ORTHO05D000012 7.7e-09 65.1 79 45.6
QL09p000646 Quercus lobata HOM05D000005 ORTHO05D000012 7.7e-09 65.1 235 27.2
Gohir.A11G283852 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-08 64.3 74 45.9
GSVIVG01025958001 Vitis vinifera HOM05D000005 ORTHO05D011281 1.3e-08 64.3 74 45.9
Duzib268G0232 Durio zibethinus HOM05D000005 ORTHO05D000012 2.2e-08 63.5 104 41.3
QL06p038756 Quercus lobata HOM05D000005 ORTHO05D000012 2.2e-08 63.5 156 34.6
Atru.chr7.2349 Acer truncatum HOM05D000005 ORTHO05D000012 3.8e-08 62.8 76 40.8
BraA06t24978Z Brassica rapa HOM05D000005 ORTHO05D000012 3.8e-08 62.8 73 49.3
GSVIVG01037219001 Vitis vinifera HOM05D000005 ORTHO05D011281 3.8e-08 62.8 73 45.2
CARHR073250 Cardamine hirsuta HOM05D000005 ORTHO05D000012 5.0e-08 62.4 70 42.9
QL10p029742 Quercus lobata HOM05D000005 ORTHO05D000012 5.0e-08 62.4 227 29.1
QL10p051095 Quercus lobata HOM05D000005 ORTHO05D000012 5.0e-08 62.4 75 46.7
BcaC05g29962 Brassica carinata HOM05D000005 ORTHO05D000449 6.5e-08 62.0 87 40.2
Duzib268G0652 Durio zibethinus HOM05D000005 ORTHO05D000012 6.5e-08 62.0 73 45.2
Manes.12G149700 Manihot esculenta HOM05D000005 ORTHO05D000012 6.5e-08 62.0 168 29.2
TPR.G19238 Trifolium pratense HOM05D000005 ORTHO05D000012 6.5e-08 62.0 65 49.2
Ciclev10018553m.g Citrus clementina HOM05D000005 ORTHO05D000012 8.5e-08 61.6 80 42.5
FAN10G3445 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.5e-08 61.6 89 42.7
Phvul.010G101200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 8.5e-08 61.6 76 43.4
BcaC07g39357 Brassica carinata HOM05D000005 ORTHO05D000012 1.1e-07 61.2 82 43.9
TPR.G19257 Trifolium pratense HOM05D000005 ORTHO05D000012 1.1e-07 61.2 77 42.9
Gohir.A11G282513 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.5e-07 60.8 73 42.5
QL11p010027 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-07 60.8 75 46.7
Sed0000589 Sechium edule HOM05D000005 ORTHO05D000012 1.5e-07 60.8 60 55.0
Sed0001473 Sechium edule HOM05D000005 ORTHO05D000012 1.5e-07 60.8 60 55.0
Ciclev10018689m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.9e-07 60.5 70 45.7
Lju279C1T2 Lonicera japonica HOM05D000005 ORTHO05D001748 1.9e-07 60.5 80 45.0
Lj4g0019720 Lotus japonicus HOM05D000005 ORTHO05D000012 1.9e-07 60.5 78 43.6
LjContig00081g0000067 Lotus japonicus HOM05D000005 ORTHO05D000012 1.9e-07 60.5 78 43.6
MD01G1188900 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-07 60.5 76 44.7
MD07G1244600 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-07 60.5 76 46.1
MD07G1260700 Malus domestica HOM05D003506 ORTHO05D000012 1.9e-07 60.5 76 44.7
Potri.019G070393 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.9e-07 60.5 70 42.9
QL07p006276 Quercus lobata HOM05D000005 ORTHO05D000012 1.9e-07 60.5 73 46.6
Sp7g06590 Schrenkiella parvula HOM05D000005 ORTHO05D000012 1.9e-07 60.5 73 47.9
Gohir.D11G297400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.5e-07 60.1 239 25.9
Lj1g0024028 Lotus japonicus HOM05D000005 ORTHO05D000012 2.5e-07 60.1 208 26.9
QL06p046738 Quercus lobata HOM05D000005 ORTHO05D000012 2.5e-07 60.1 77 44.2
QL11p010312 Quercus lobata HOM05D000005 ORTHO05D000012 2.5e-07 60.1 75 46.7
QL08p007729 Quercus lobata HOM05D000005 ORTHO05D000012 3.2e-07 59.7 141 34.0
VMungo0251G1710 Vigna mungo HOM05D000005 ORTHO05D000012 3.2e-07 59.7 78 42.3
GSVIVG01034812001 Vitis vinifera HOM05D000005 ORTHO05D011281 3.2e-07 59.7 74 44.6
MD05G1138400 Malus domestica HOM05D000005 ORTHO05D000012 4.2e-07 59.3 74 44.6
MD10G1136500 Malus domestica HOM05D000005 ORTHO05D000012 4.2e-07 59.3 77 44.2
Prupe.8G176400 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-07 59.3 73 43.8
QL06p046624 Quercus lobata HOM05D000005 ORTHO05D000012 4.2e-07 59.3 73 45.2
TPR.G25944 Trifolium pratense HOM05D000005 ORTHO05D017065 4.2e-07 59.3 77 45.5
FAN16G0807 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.5e-07 58.9 81 40.7
Prupe.2G057600 Prunus persica HOM05D000005 ORTHO05D000012 5.5e-07 58.9 60 45.0
QL11p010296 Quercus lobata HOM05D000005 ORTHO05D000012 5.5e-07 58.9 75 45.3
Atru.chr2.279 Acer truncatum HOM05D000005 ORTHO05D000012 7.2e-07 58.5 69 43.5
Thhalv10028373m.g Eutrema salsugineum HOM05D000005 ORTHO05D000012 7.2e-07 58.5 116 35.3
MD07G1261100 Malus domestica HOM05D000005 ORTHO05D000012 7.2e-07 58.5 74 44.6
QL06p046778 Quercus lobata HOM05D000005 ORTHO05D000012 7.2e-07 58.5 73 46.6
TPR.G6207 Trifolium pratense HOM05D000005 ORTHO05D000012 7.2e-07 58.5 73 42.5
QL08p001574 Quercus lobata HOM05D000005 ORTHO05D000012 9.4e-07 58.2 74 45.9
QL08p005880 Quercus lobata HOM05D000005 ORTHO05D000012 9.4e-07 58.2 83 43.4
QL08p008719 Quercus lobata HOM05D000005 ORTHO05D000012 9.4e-07 58.2 83 43.4
QL11p010050 Quercus lobata HOM05D000005 ORTHO05D000012 9.4e-07 58.2 75 45.3
arahy.Tifrunner.gnm1.ann1.0MD4T6 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.2e-06 57.8 73 42.5
Carub.0002s2645 Capsella rubella HOM05D000005 ORTHO05D000012 1.2e-06 57.8 69 42.0
MD10G1131200 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-06 57.8 72 44.4
Manes.18G115300 Manihot esculenta HOM05D000005 ORTHO05D000012 1.2e-06 57.8 70 44.3
Manes.18G115500 Manihot esculenta HOM05D000005 ORTHO05D000012 1.2e-06 57.8 70 44.3
Prupe.8G034900 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-06 57.8 77 42.9
Prupe.8G053300 Prunus persica HOM05D000005 ORTHO05D000012 1.2e-06 57.8 74 44.6
C04p55430 Brassica napus HOM05D000005 ORTHO05D000012 1.6e-06 57.4 73 43.8
Thhalv10022404m.g Eutrema salsugineum HOM05D000005 ORTHO05D000449 1.6e-06 57.4 75 42.7
MD10G1136400 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-06 57.4 74 43.2
MD10G1137400 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-06 57.4 74 43.2
Potri.019G070479 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.6e-06 57.4 70 42.9
QL08p007774 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-06 57.4 74 47.3
GSVIVG01037221001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.6e-06 57.4 76 43.4
arahy.Tifrunner.gnm1.ann1.NDL7HJ Arachis hypogaea HOM05D000005 ORTHO05D000012 2.1e-06 57.0 73 42.5
BolC1t02720H Brassica oleracea HOM05D000005 ORTHO05D000449 2.1e-06 57.0 73 42.5
CiPaw.01G041800 Carya illinoinensis HOM05D000101 ORTHO05D000089 2.1e-06 57.0 67 41.8
Eucgr.H01908 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.1e-06 57.0 76 36.8
Eucgr.L02373 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.1e-06 57.0 73 41.1
Lj4g0013302 Lotus japonicus HOM05D000005 ORTHO05D000012 2.1e-06 57.0 77 42.9
Psat7g053720 Pisum sativum HOM05D000005 ORTHO05D000294 2.1e-06 57.0 73 41.1
Potri.019G069600 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.1e-06 57.0 70 42.9
Potri.019G070001 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.1e-06 57.0 70 42.9
Potri.019G070565 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.1e-06 57.0 70 42.9
Prupe.6G152300 Prunus persica HOM05D000005 ORTHO05D000012 2.1e-06 57.0 76 40.8
Dinv22126 Davidia involucrata HOM05D000005 ORTHO05D001748 2.7e-06 56.6 90 41.1
Eucgr.E02234 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.7e-06 56.6 73 42.5
Lj3g0005055 Lotus japonicus HOM05D000005 ORTHO05D017065 2.7e-06 56.6 77 41.6
MD02G1260400 Malus domestica HOM05D000005 ORTHO05D000012 2.7e-06 56.6 72 47.2
Prupe.8G173600 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-06 56.6 75 42.7
QL03p004732 Quercus lobata HOM05D000005 ORTHO05D000012 2.7e-06 56.6 73 38.4
QL03p004829 Quercus lobata HOM05D000005 ORTHO05D000012 2.7e-06 56.6 73 38.4
QL08p013743 Quercus lobata HOM05D000101 ORTHO05D000089 2.7e-06 56.6 102 38.2
QL09p004171 Quercus lobata HOM05D000005 ORTHO05D001748 2.7e-06 56.6 101 34.7
BraA03t12147Z Brassica rapa HOM05D000005 ORTHO05D000012 3.6e-06 56.2 72 43.1
Ciclev10024817m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.6e-06 56.2 66 42.4
Dinv32052 Davidia involucrata HOM05D000005 ORTHO05D000012 3.6e-06 56.2 76 36.8
Gohir.D11G295925 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.6e-06 56.2 65 46.2
Lj2g0005776 Lotus japonicus HOM05D000005 ORTHO05D000012 3.6e-06 56.2 72 44.4
QL08p005842 Quercus lobata HOM05D000005 ORTHO05D000012 3.6e-06 56.2 76 42.1
BcaC07g39355 Brassica carinata HOM05D000005 ORTHO05D000012 4.7e-06 55.8 71 40.8
C08p23770 Brassica napus HOM05D000005 ORTHO05D000012 4.7e-06 55.8 71 40.8
BolC8t50003H Brassica oleracea HOM05D000005 ORTHO05D000012 4.7e-06 55.8 71 40.8
Cc08_g06840 Coffea canephora HOM05D000005 ORTHO05D000012 4.7e-06 55.8 85 36.5
Gohir.D11G295200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.7e-06 55.8 73 39.7
Gorai.007G318500 Gossypium raimondii HOM05D000005 ORTHO05D000012 4.7e-06 55.8 73 39.7
Lj2g0005312 Lotus japonicus HOM05D000005 ORTHO05D000012 4.7e-06 55.8 80 41.2
Phvul.002G098200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 4.7e-06 55.8 71 45.1
Prupe.5G019000 Prunus persica HOM05D000005 ORTHO05D000012 4.7e-06 55.8 73 46.6
Sopen12g032820 Solanum pennellii HOM05D000005 ORTHO05D011639 4.7e-06 55.8 76 38.2
BcaB01g01706 Brassica carinata HOM05D000005 ORTHO05D000012 6.1e-06 55.5 72 44.4
BcaB01g04898 Brassica carinata HOM05D000005 ORTHO05D000449 6.1e-06 55.5 73 42.5
CiPaw.10G144300 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.1e-06 55.5 76 40.8
ClCG11G008400 Citrullus lanatus HOM05D000005 ORTHO05D000012 6.1e-06 55.5 144 29.2
Ciclev10024308m.g Citrus clementina HOM05D000005 ORTHO05D000012 6.1e-06 55.5 117 35.0
Ciclev10024424m.g Citrus clementina HOM05D000005 ORTHO05D000012 6.1e-06 55.5 70 41.4
Duzib133G0064 Durio zibethinus HOM05D000005 ORTHO05D000012 6.1e-06 55.5 67 41.8
Lj3C243T3 Lonicera japonica HOM05D000005 ORTHO05D001748 6.1e-06 55.5 73 39.7
MD02G1278900 Malus domestica HOM05D000005 ORTHO05D000012 6.1e-06 55.5 72 45.8
QL07p043404 Quercus lobata HOM05D000005 ORTHO05D000012 6.1e-06 55.5 88 40.9
QL07p044493 Quercus lobata HOM05D000005 ORTHO05D000012 6.1e-06 55.5 88 40.9
QL09p004085 Quercus lobata HOM05D000005 ORTHO05D000012 6.1e-06 55.5 60 46.7
VMungo0251G1589 Vigna mungo HOM05D000005 ORTHO05D000012 6.1e-06 55.5 71 45.1
AL6G28770 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 8.0e-06 55.1 61 50.8
arahy.Tifrunner.gnm1.ann1.5IC1T0 Arachis hypogaea HOM05D000005 ORTHO05D000012 8.0e-06 55.1 71 49.3
arahy.Tifrunner.gnm1.ann1.P9Q3PR Arachis hypogaea HOM05D000005 ORTHO05D000012 8.0e-06 55.1 71 49.3
BcaC04g21186 Brassica carinata HOM05D000005 ORTHO05D000012 8.0e-06 55.1 118 35.6
BcaC09g50204 Brassica carinata HOM05D000005 ORTHO05D000449 8.0e-06 55.1 73 41.1
C01p27870 Brassica napus HOM05D000005 ORTHO05D000449 8.0e-06 55.1 73 41.1
C09p34470 Brassica napus HOM05D000005 ORTHO05D000012 8.0e-06 55.1 118 35.6
BolC3t15883H Brassica oleracea HOM05D000005 ORTHO05D000012 8.0e-06 55.1 72 41.7
BolC9t56290H Brassica oleracea HOM05D000005 ORTHO05D000012 8.0e-06 55.1 118 35.6
CANSAT01G2682 Cannabis sativa HOM05D000005 ORTHO05D000012 8.0e-06 55.1 71 43.7
CAN.G459.23 Capsicum annuum HOM05D000005 ORTHO05D011639 8.0e-06 55.1 70 41.4
Duzib133G1348 Durio zibethinus HOM05D000005 ORTHO05D000012 8.0e-06 55.1 67 38.8
FvH4_1g16600 Fragaria vesca HOM05D000005 ORTHO05D045876 8.0e-06 55.1 78 37.2
FvH4_1g16640 Fragaria vesca HOM05D000005 ORTHO05D012233 8.0e-06 55.1 72 43.1
Lj3g0010719 Lotus japonicus HOM05D000005 ORTHO05D000012 8.0e-06 55.1 73 41.1
MD01G1190100 Malus domestica HOM05D000005 ORTHO05D000012 8.0e-06 55.1 73 43.8
Prupe.1G160400 Prunus persica HOM05D000005 ORTHO05D000012 8.0e-06 55.1 77 41.6
QL03p017067 Quercus lobata HOM05D000005 ORTHO05D000012 8.0e-06 55.1 73 39.7


User provided reference genes

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