Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 2.0e-86 322.4 163 100.0
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 2.1e-43 179.5 161 68.9
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.3e-29 132.9 141 58.2
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 5.2e-26 121.7 146 52.1
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 8.9e-26 120.9 151 53.6
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.5e-25 120.2 150 47.3
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 7.5e-25 117.9 140 47.9
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.7e-22 109.4 142 49.3
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.9e-22 108.2 138 50.0
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 1.1e-20 104.0 146 47.3
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 2.1e-19 99.8 137 48.9
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.3e-18 96.3 134 49.3
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 3.1e-18 95.9 144 49.3
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 6.8e-18 94.7 131 48.1
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.2e-17 94.0 154 40.9
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.5e-17 93.6 154 45.5
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 2.0e-17 93.2 157 45.2
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.0e-17 93.2 168 39.3
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.4e-17 92.4 130 46.2
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 4.4e-17 92.0 132 47.7
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 5.8e-17 91.7 154 40.3
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 9.8e-17 90.9 166 41.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 9.8e-17 90.9 134 44.0
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 1.7e-16 90.1 134 43.3
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.9e-16 89.4 140 44.3
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 6.4e-16 88.2 140 41.4
SalBow6G5116 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.4e-15 87.0 118 47.5
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.4e-15 86.3 135 43.7
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.1e-15 85.5 142 42.3
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 4.1e-15 85.5 151 46.4
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 7.0e-15 84.7 141 43.3
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.2e-14 84.0 141 39.7
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.6e-14 83.6 146 39.7
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 2.0e-14 83.2 147 40.8
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 2.0e-14 83.2 141 39.7
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.7e-14 82.8 124 46.0
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 4.6e-14 82.0 144 42.4
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 7.8e-14 81.3 122 41.8
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 1.0e-13 80.9 128 46.1
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 1.7e-13 80.1 111 49.5
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.0e-13 79.3 146 37.7
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.0e-13 79.3 138 42.8
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 3.0e-13 79.3 132 43.2
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 3.9e-13 79.0 173 36.4
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.9e-13 79.0 142 41.5
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.0e-13 78.6 145 40.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 8.6e-13 77.8 142 40.8
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 8.6e-13 77.8 142 41.5
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.1e-12 77.4 140 39.3
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.1e-12 77.4 140 39.3
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.9e-12 76.6 145 42.1
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.3e-12 75.5 141 37.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 7.3e-12 74.7 129 41.9
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 7.3e-12 74.7 124 44.4
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.3e-12 74.7 124 44.4
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 1.2e-11 73.9 155 39.4
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 1.6e-11 73.6 140 37.9
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 1.6e-11 73.6 130 45.4
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.1e-11 73.2 147 39.5
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 4.7e-11 72.0 135 42.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.7e-11 72.0 63 58.7
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 1.4e-10 70.5 140 34.3
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.3e-10 69.7 144 38.9
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.1e-10 69.3 91 51.6
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.1e-10 69.3 138 41.3
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.1e-10 69.3 141 41.8
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 3.1e-10 69.3 157 35.7
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.0e-10 68.9 130 43.1
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 5.2e-10 68.6 153 34.6
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 5.2e-10 68.6 151 35.1
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 5.2e-10 68.6 153 34.6
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 5.2e-10 68.6 132 35.6
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 5.2e-10 68.6 137 35.8
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.9e-10 67.8 140 37.9
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 8.9e-10 67.8 123 37.4
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 8.9e-10 67.8 123 37.4
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 8.9e-10 67.8 147 40.8
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.2e-09 67.4 55 65.5
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.2e-09 67.4 147 33.3
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.5e-09 67.0 131 38.9
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.5e-09 67.0 133 35.3
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.6e-09 66.2 147 33.3
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 2.6e-09 66.2 150 34.7
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 3.4e-09 65.9 172 35.5
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 3.4e-09 65.9 62 61.3
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.4e-09 65.5 132 37.9
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 4.4e-09 65.5 130 40.0
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 5.8e-09 65.1 118 39.0
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 5.8e-09 65.1 66 54.5
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 7.5e-09 64.7 59 62.7
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 7.5e-09 64.7 138 35.5
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 9.8e-09 64.3 56 64.3
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 9.8e-09 64.3 76 48.7
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.8e-09 64.3 147 32.7
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 9.8e-09 64.3 69 56.5
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 9.8e-09 64.3 150 34.7
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 9.8e-09 64.3 107 42.1
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.3e-08 63.9 159 35.2
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.2e-08 63.2 68 57.4
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.9e-08 62.8 38 81.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 2.9e-08 62.8 66 57.6
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 3.7e-08 62.4 76 44.7
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.7e-08 62.4 148 34.5
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 4.9e-08 62.0 135 35.6
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 4.9e-08 62.0 49 69.4
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.4e-08 61.6 53 66.0
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 8.3e-08 61.2 142 35.2
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 1.1e-07 60.8 49 67.3
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.1e-07 60.8 49 67.3
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 1.1e-07 60.8 65 56.9
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.1e-07 60.8 63 54.0
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.1e-07 60.8 54 63.0
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 1.1e-07 60.8 65 53.8
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.4e-07 60.5 149 34.2
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.4e-07 60.5 129 38.0
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.9e-07 60.1 134 35.1
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 1.9e-07 60.1 119 38.7
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.9e-07 60.1 143 35.0
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 2.4e-07 59.7 85 45.9
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 2.4e-07 59.7 146 34.9
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 3.2e-07 59.3 175 33.7
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 9.2e-07 57.8 135 36.3
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.2e-06 57.4 119 39.5
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.2e-06 57.4 146 34.9
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.2e-06 57.4 128 35.2
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.2e-06 57.4 130 35.4
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.1e-06 56.6 150 34.0
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 2.1e-06 56.6 112 39.3
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 2.7e-06 56.2 52 63.5
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 2.7e-06 56.2 49 63.3
Ca_08391_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 3.5e-06 55.8 113 37.2
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 3.5e-06 55.8 128 35.2
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 4.6e-06 55.5 36 77.8
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 4.6e-06 55.5 46 60.9
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 4.6e-06 55.5 39 66.7
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 4.6e-06 55.5 121 37.2
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 4.6e-06 55.5 121 37.2
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.6e-06 55.5 62 51.6
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 6.0e-06 55.1 61 52.5
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 6.0e-06 55.1 150 35.3
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 6.0e-06 55.1 109 38.5
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 6.0e-06 55.1 109 38.5
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 7.8e-06 54.7 156 32.1
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 7.8e-06 54.7 46 58.7
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 7.8e-06 54.7 43 60.5


User provided reference genes

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