Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.9e-181 639.0 319 100.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 2.6e-114 416.0 302 72.2
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.7e-111 406.0 301 69.1
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.3e-109 398.7 297 69.0
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 6.2e-108 394.8 301 67.1
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 4.9e-105 385.2 294 67.3
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.4e-104 383.6 292 69.2
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 3.9e-102 375.6 275 68.7
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.3e-100 370.5 300 63.0
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.6e-100 370.2 302 65.2
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-99 367.1 310 61.6
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-99 366.7 301 62.5
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 9.0e-99 364.4 295 64.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.0e-97 360.9 293 63.8
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 8.4e-97 357.8 317 60.3
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 3.2e-96 355.9 289 63.0
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 4.2e-96 355.5 301 59.5
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.1e-96 354.8 289 63.0
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.2e-95 354.0 256 69.9
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.6e-95 353.6 302 61.3
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.6e-95 353.6 279 63.1
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.1e-95 353.2 295 61.7
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.9e-94 349.0 302 58.9
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.1e-94 348.6 295 61.4
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 6.7e-94 348.2 300 58.7
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.1e-93 347.4 302 58.9
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-93 346.7 299 59.9
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.9e-93 346.7 293 61.4
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.5e-93 346.3 282 63.5
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.5e-93 346.3 302 60.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 5.7e-93 345.1 300 60.0
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.3e-92 344.0 293 60.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 2.1e-92 343.2 290 60.0
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.1e-92 343.2 302 58.6
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.7e-92 342.4 294 59.9
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 4.8e-92 342.0 258 67.4
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 6.2e-92 341.7 266 63.5
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-91 340.5 300 59.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.8e-91 340.1 294 62.2
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.9e-91 338.2 293 60.8
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.7e-89 333.6 291 59.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.7e-89 333.6 295 60.0
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 3.8e-89 332.4 293 57.7
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 6.5e-89 331.6 300 57.3
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 8.4e-89 331.3 294 57.8
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 8.4e-89 331.3 301 56.1
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 8.4e-89 331.3 300 57.0
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 1.4e-88 330.5 262 64.1
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.5e-88 329.7 303 60.4
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.5e-88 329.7 301 56.1
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 4.2e-88 328.9 300 58.7
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.1e-87 326.6 299 56.5
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 4.6e-87 325.5 293 59.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.1e-87 325.1 290 60.0
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.8e-86 323.6 297 59.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 6.7e-86 321.6 274 59.9
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.5e-85 320.5 302 55.0
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.5e-85 319.7 289 56.7
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 9.7e-85 317.8 296 56.1
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.6e-84 317.0 307 56.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 4.8e-84 315.5 301 56.5
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.8e-84 315.5 399 46.1
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 8.2e-84 314.7 296 55.7
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.4e-83 313.9 303 55.1
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 6.9e-83 311.6 339 52.2
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.7e-81 307.0 301 54.5
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.7e-81 307.0 279 56.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.7e-81 307.0 300 53.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.9e-81 306.2 301 53.5
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.8e-81 305.8 301 53.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 6.5e-81 305.1 302 54.3
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 8.5e-81 304.7 307 55.0
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 8.5e-81 304.7 307 55.0
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 1.9e-80 303.5 283 53.7
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 9.4e-80 301.2 301 52.8
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 9.4e-80 301.2 300 53.0
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.6e-79 300.4 295 55.3
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 4.6e-79 298.9 277 56.3
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 6.1e-79 298.5 278 55.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 6.1e-79 298.5 294 55.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.4e-78 297.4 301 53.8
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 3.3e-77 292.7 265 56.2
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.7e-77 292.0 249 60.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 5.7e-77 292.0 307 55.4
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 9.7e-77 291.2 261 55.9
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.7e-76 290.4 301 50.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 3.7e-76 289.3 301 52.5
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.4e-75 286.6 303 50.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.1e-75 286.2 293 52.2
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.5e-74 283.9 298 49.7
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.4e-74 282.7 303 49.8
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 5.9e-74 282.0 340 49.4
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.3e-73 280.8 304 49.3
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 2.2e-73 280.0 295 51.9
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.8e-73 279.3 298 51.3
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.8e-73 279.3 298 50.3
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.9e-72 276.9 296 49.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-72 276.9 296 49.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.9e-72 276.9 296 49.3
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.7e-71 273.1 291 50.2
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.7e-71 272.3 296 47.6
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 7.9e-71 271.6 237 58.6
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 5.1e-70 268.9 299 48.5
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 5.1e-70 268.9 296 48.0
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 5.1e-70 268.9 296 48.0
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.1e-70 268.9 298 46.6
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 8.8e-70 268.1 297 47.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 8.8e-70 268.1 297 47.8
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.1e-69 267.7 298 48.3
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-69 267.7 298 47.7
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-69 267.7 297 47.8
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.5e-69 267.3 296 47.6
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 2.0e-69 266.9 299 48.2
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.0e-69 266.9 237 57.8
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.0e-69 266.9 303 48.5
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 3.3e-69 266.2 303 46.5
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.3e-69 266.2 297 48.1
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 5.7e-69 265.4 297 47.1
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 5.7e-69 265.4 297 47.1
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 5.7e-69 265.4 297 47.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-68 264.2 297 47.5
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 3.7e-68 262.7 237 52.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.4e-67 260.8 298 45.6
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 7.0e-67 258.5 291 48.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.5e-66 256.1 303 48.2
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.7e-65 253.8 298 46.3
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.2e-65 253.4 299 45.8
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 7.2e-64 248.4 289 47.1
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.1e-63 246.9 294 44.9
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.1e-63 246.9 294 45.2
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 2.7e-63 246.5 301 44.2
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 3.6e-63 246.1 295 43.7
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.8e-60 236.5 300 45.7
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 8.0e-55 218.4 298 45.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 8.8e-54 214.9 173 61.3
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.7e-52 209.5 293 42.3
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.7e-50 203.4 255 40.4
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 8.5e-49 198.4 165 59.4
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.1e-48 198.0 167 60.5
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.0e-46 189.9 171 58.5
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.1e-40 171.4 185 51.4
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.2e-31 139.0 194 43.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 4.9e-28 129.4 142 51.4
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.4e-27 125.9 116 56.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.3e-25 121.3 127 48.8
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.9e-25 119.8 127 48.0
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.8e-22 110.9 89 61.8
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 2.3e-22 110.5 299 29.8
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-21 108.2 93 58.1
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-21 108.2 93 58.1
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.4e-21 106.7 299 28.4
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 7.5e-21 105.5 107 52.3
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.9e-20 103.6 102 52.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.0e-18 95.9 104 48.1
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 75 53.3
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 75 53.3
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 75 53.3
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 3.1e-14 83.6 75 49.3
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 6.8e-14 82.4 131 35.1
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 9.9e-13 78.6 300 27.7
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 1.9e-08 64.3 98 38.8
CSS0032898 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D038087 4.7e-07 59.7 41 65.9
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 1.8e-06 57.8 40 67.5


User provided reference genes

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