Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 1.8e-88 329.3 182 100.0
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 1.4e-51 206.8 206 63.1
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 5.8e-50 201.4 212 61.3
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.3e-49 200.3 212 59.4
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 7.3e-45 184.5 211 57.3
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.3e-43 179.5 202 57.9
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 5.2e-43 178.3 216 56.0
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 1.1e-40 170.6 209 53.1
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.4e-40 170.2 209 52.2
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.4e-40 169.5 216 56.9
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 2.1e-39 166.4 209 55.0
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 3.5e-39 165.6 211 51.2
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 4.6e-39 165.2 211 50.2
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 6.0e-39 164.9 211 51.7
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.7e-38 163.3 216 55.6
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 2.3e-38 162.9 209 53.1
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 6.6e-38 161.4 214 51.4
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 8.6e-38 161.0 209 52.2
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 2.5e-37 159.5 205 51.2
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 1.6e-36 156.8 208 51.4
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 6.2e-36 154.8 211 49.8
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 8.1e-36 154.5 197 53.3
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 1.1e-35 154.1 216 48.6
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 1.4e-35 153.7 188 54.8
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 2.3e-35 152.9 213 49.8
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 2.6e-34 149.4 210 49.5
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 4.4e-34 148.7 190 54.2
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 5.8e-34 148.3 212 48.1
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 2.2e-33 146.4 203 52.7
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 2.2e-33 146.4 181 52.5
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 3.8e-33 145.6 216 48.6
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 4.9e-33 145.2 219 49.3
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.9e-32 143.3 195 50.8
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 1.9e-32 143.3 196 53.6
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.4e-32 142.9 200 50.5
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.2e-32 142.5 200 50.0
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.2e-32 142.5 200 50.0
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 1.6e-31 140.2 212 46.7
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 1.6e-31 140.2 216 48.1
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 3.5e-31 139.0 210 49.0
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 7.8e-31 137.9 190 48.9
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 1.7e-30 136.7 211 48.3
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 3.0e-30 136.0 211 50.2
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 3.9e-30 135.6 193 50.3
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 5.1e-30 135.2 186 50.0
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 6.6e-30 134.8 206 50.5
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 1.5e-29 133.7 211 49.8
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.9e-29 133.3 184 50.5
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 1.6e-28 130.2 223 44.8
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 2.8e-28 129.4 215 47.0
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 8.1e-28 127.9 220 45.5
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 8.1e-28 127.9 216 45.4
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.4e-27 126.3 191 48.7
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 2.4e-27 126.3 206 46.6
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.1e-27 125.9 193 48.7
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 3.1e-27 125.9 205 45.4
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 6.9e-27 124.8 191 46.1
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.2e-26 124.0 208 46.2
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.5e-26 123.6 195 48.2
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.0e-26 123.2 193 48.2
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 9.9e-26 120.9 217 47.9
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 2.2e-25 119.8 213 45.5
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 1.4e-24 117.1 211 45.5
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 3.2e-24 115.9 224 42.4
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 4.2e-24 115.5 187 47.6
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 2.1e-23 113.2 217 42.9
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 4.6e-23 112.1 188 47.3
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 6.0e-23 111.7 192 46.4
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 1.7e-22 110.2 146 50.7
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.3e-22 109.8 194 44.8
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 3.9e-22 109.0 201 43.3
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 8.7e-22 107.8 215 44.2
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 8.7e-22 107.8 210 45.7
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 9.6e-21 104.4 190 44.7
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 9.6e-21 104.4 209 40.2
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 1.6e-20 103.6 188 45.2
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 2.1e-20 103.2 200 41.0
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 3.6e-20 102.4 200 42.0
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 8.1e-20 101.3 80 65.0
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.1e-19 100.9 190 42.1
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 2.4e-19 99.8 194 45.4
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 2.4e-19 99.8 214 39.3
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 3.1e-19 99.4 188 43.6
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 2.6e-18 96.3 198 43.9
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 5.8e-18 95.1 167 45.5
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 5.8e-18 95.1 193 41.5
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.7e-17 93.6 200 40.5
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.8e-17 92.4 201 42.3
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 1.1e-16 90.9 185 37.8
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.4e-16 90.5 194 39.7
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 4.2e-16 89.0 202 41.1
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 4.2e-16 89.0 86 61.6
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 1.6e-15 87.0 196 40.3
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 4.6e-15 85.5 181 39.8
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 4.6e-15 85.5 181 39.8
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 6.0e-15 85.1 86 57.0
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 2.3e-14 83.2 88 52.3
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 2.3e-14 83.2 90 62.2
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 6.7e-14 81.6 208 39.4
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 1.5e-13 80.5 197 38.6
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.5e-13 80.5 188 37.2
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 3.3e-13 79.3 205 39.0
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 4.3e-13 79.0 196 40.3
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 4.3e-13 79.0 196 40.3
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 7.4e-13 78.2 166 41.0
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 9.6e-13 77.8 201 39.8
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 9.6e-13 77.8 208 38.9
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 1.3e-12 77.4 188 36.2
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 1.3e-12 77.4 153 38.6
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 4.8e-12 75.5 196 40.8
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 4.8e-12 75.5 201 36.8
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 2.4e-11 73.2 92 50.0
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 4.0e-11 72.4 202 40.1
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 9.0e-11 71.2 215 38.6
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 1.5e-10 70.5 200 39.5
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 2.6e-10 69.7 76 56.6
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 2.6e-10 69.7 76 56.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 4.5e-10 68.9 205 38.5
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 9.9e-10 67.8 199 39.2
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 9.9e-10 67.8 199 39.2
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 3.8e-09 65.9 192 35.9
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 8.4e-09 64.7 179 34.6
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 1.9e-08 63.5 177 32.8


User provided reference genes

Program Settings