Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.8e-262 908.7 456 100.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.2e-207 725.7 442 81.2
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.4e-206 723.0 450 81.3
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.8e-202 708.8 438 81.3
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 6.2e-202 707.6 435 80.2
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.2e-199 699.1 433 78.3
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 7.8e-197 690.6 434 79.0
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.3e-196 689.9 436 78.4
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.7e-196 689.5 436 78.4
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 4.5e-192 674.9 429 78.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.7e-191 672.9 475 72.6
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.2e-190 668.7 442 76.5
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.2e-190 668.7 425 76.5
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 4.2e-190 668.3 428 78.3
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 4.2e-190 668.3 434 75.3
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.1e-190 667.5 425 76.2
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.1e-190 667.5 425 76.2
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.2e-189 666.8 427 77.3
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 2.1e-189 666.0 399 82.0
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.1e-189 666.0 427 77.8
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 6.0e-189 664.5 424 76.7
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.3e-188 663.3 426 75.4
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 1.3e-188 663.3 443 75.2
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 8.7e-188 660.6 432 76.2
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.5e-187 659.8 408 78.9
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.3e-187 658.3 432 75.2
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 5.6e-187 657.9 427 76.3
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 9.6e-187 657.1 427 75.6
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.6e-186 656.4 436 75.0
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.6e-186 656.4 433 76.9
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 3.7e-186 655.2 433 75.1
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 6.2e-186 654.4 423 75.9
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.1e-185 653.7 426 74.6
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.4e-185 653.3 437 76.2
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.4e-185 652.5 387 82.7
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 6.9e-185 651.0 423 75.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.6e-184 649.0 440 74.3
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 7.6e-184 647.5 433 75.3
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 2.9e-183 645.6 391 81.1
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.8e-183 645.2 446 72.9
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.1e-182 643.7 454 71.4
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.9e-182 642.9 433 73.9
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.4e-182 642.5 435 73.6
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 4.2e-182 641.7 433 74.4
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 5.5e-182 641.3 417 75.5
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 7.1e-182 641.0 434 75.1
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 9.3e-182 640.6 449 73.3
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 9.3e-182 640.6 433 74.4
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.2e-181 640.2 386 79.0
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.3e-180 636.0 434 73.3
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.5e-179 633.3 424 73.1
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.5e-179 633.3 426 73.7
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.9e-179 632.9 432 72.2
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 2.5e-179 632.5 425 72.2
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.5e-179 632.5 431 73.8
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 4.3e-179 631.7 412 74.5
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.6e-178 629.8 425 72.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 2.8e-178 629.0 435 71.3
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.8e-177 626.3 432 71.8
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 3.1e-177 625.5 435 71.7
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 5.3e-177 624.8 420 75.0
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.0e-175 620.5 446 70.0
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.7e-175 619.8 442 71.5
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.9e-175 619.0 436 71.1
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 4.9e-175 618.2 437 72.1
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.1e-174 617.1 420 72.4
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.9e-174 616.3 427 72.6
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 5.5e-174 614.8 451 70.3
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 7.1e-174 614.4 459 68.2
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 7.1e-174 614.4 421 74.8
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.6e-173 613.2 432 70.6
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 7.9e-173 610.9 411 73.0
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 2.3e-172 609.4 400 74.5
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 3.0e-172 609.0 428 72.0
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 8.7e-172 607.4 386 75.9
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.5e-171 606.7 423 71.6
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 7.4e-171 604.4 449 67.7
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 9.7e-171 604.0 393 74.6
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 9.7e-171 604.0 393 74.6
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 2.8e-170 602.4 393 74.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 4.8e-170 601.7 393 74.0
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.5e-168 596.7 399 72.7
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.5e-168 596.7 388 72.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 2.0e-168 596.3 447 70.5
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.9e-167 592.4 447 70.2
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 3.8e-167 592.0 443 68.8
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 3.8e-167 592.0 480 65.0
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 3.8e-167 592.0 388 73.5
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 5.0e-167 591.7 434 67.3
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 6.5e-167 591.3 388 76.0
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 5.7e-163 578.2 416 70.2
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.6e-162 576.6 382 73.3
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.1e-161 573.9 391 71.1
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.0e-156 557.4 417 66.7
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.4e-156 557.0 338 77.8
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.2e-154 549.7 387 70.0
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 3.7e-154 548.9 398 68.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.8e-154 548.5 300 86.3
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.7e-151 540.0 386 68.1
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.1e-150 537.3 400 68.0
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.7e-149 532.7 432 64.6
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.5e-147 526.9 335 75.2
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 3.7e-146 522.3 417 63.3
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 7.0e-145 518.1 287 90.6
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 8.5e-143 511.1 389 64.3
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 2.5e-142 509.6 417 62.4
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 8.0e-141 504.6 344 72.7
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 7.5e-139 498.0 394 63.5
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.4e-137 493.0 421 59.9
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.0e-137 491.5 339 69.3
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.3e-135 487.3 338 71.9
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.7e-135 486.9 339 68.4
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.1e-133 479.9 339 67.8
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 9.1e-129 464.5 443 55.3
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 4.5e-128 462.2 281 77.6
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.0e-111 405.6 286 70.6
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 6.0e-104 382.1 301 60.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.0e-103 381.3 332 56.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.9e-95 352.8 221 73.3
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.8e-93 346.7 277 61.0
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.0e-92 342.8 412 44.4
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.3e-82 311.2 202 71.8
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 2.4e-73 280.4 208 69.7
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 4.2e-73 279.6 305 47.2
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 3.0e-71 273.5 230 62.6
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 2.1e-69 267.3 242 53.3
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 6.9e-68 262.3 169 72.8
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.2e-67 261.5 241 55.2
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.8e-60 237.7 145 81.4
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.4e-49 198.7 120 73.3
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 6.3e-45 186.0 144 68.8
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 6.9e-44 182.6 110 70.0
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 2.7e-40 170.6 291 38.8
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.8e-37 160.6 140 52.1
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 2.2e-34 151.0 181 45.3
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 6.1e-32 142.9 156 53.8
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.5e-30 138.3 92 73.9
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 7.4e-30 136.0 122 56.6
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.2e-27 128.6 261 32.2
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.5e-27 126.7 414 25.6
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 9.1e-20 102.4 63 68.3
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.1e-16 91.3 52 76.9
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.0e-15 89.0 58 70.7
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 7.7e-11 72.8 92 44.6
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 5.5e-09 66.6 76 44.7
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 5.5e-09 66.6 76 44.7


User provided reference genes

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