Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.7e-266 922.2 473 100.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 1.1e-214 750.0 457 85.6
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.2e-184 650.2 460 74.3
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.5e-182 642.5 458 73.8
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 3.1e-180 635.6 458 74.7
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 7.6e-179 630.9 458 73.1
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.3e-178 630.2 452 73.2
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 9.3e-177 624.0 489 69.1
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 3.9e-175 618.6 458 70.1
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 6.7e-175 617.8 472 71.6
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.2e-173 612.8 457 70.2
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 4.1e-172 608.6 524 64.5
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 5.3e-172 608.2 462 69.9
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.5e-171 605.1 457 69.6
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.6e-168 596.7 457 69.6
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 1.5e-166 590.1 457 67.6
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 9.7e-166 587.4 458 67.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 9.7e-166 587.4 457 67.4
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.7e-165 586.6 457 67.4
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 2.8e-165 585.9 473 68.3
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.8e-165 585.9 457 68.1
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.8e-165 585.1 457 68.1
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 8.2e-165 584.3 442 70.1
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.4e-164 583.6 496 64.3
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.4e-164 583.6 457 68.1
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.8e-164 583.2 458 67.7
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.4e-164 582.8 457 68.5
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 2.6e-163 579.3 457 67.8
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.4e-161 573.5 458 66.6
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 2.5e-161 572.8 458 66.8
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.6e-160 570.1 457 66.3
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.4e-159 567.0 457 65.4
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.0e-159 565.8 494 63.0
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 4.4e-158 562.0 460 66.1
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 9.7e-158 560.8 460 66.1
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 2.2e-157 559.7 450 65.6
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 4.8e-157 558.5 457 63.5
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.4e-156 557.0 461 65.5
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 7.0e-156 554.7 454 65.4
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 4.5e-155 552.0 454 65.2
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 5.9e-155 551.6 446 66.4
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.7e-154 550.1 447 64.7
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.7e-154 550.1 473 64.3
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.7e-154 550.1 450 65.6
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 5.0e-154 548.5 461 64.2
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.1e-153 547.4 448 65.2
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.9e-153 546.6 447 64.4
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 4.2e-153 545.4 473 63.6
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 5.5e-153 545.0 464 64.9
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 5.5e-153 545.0 452 65.7
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 7.2e-153 544.7 462 64.1
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 7.2e-153 544.7 465 64.3
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 9.4e-153 544.3 466 62.4
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 3.6e-152 542.3 462 64.3
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 4.7e-152 542.0 453 64.2
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.0e-151 540.8 458 64.4
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 4.0e-151 538.9 457 63.7
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.5e-150 537.0 448 64.5
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.3e-149 533.9 452 63.7
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 3.7e-149 532.3 466 61.6
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 6.3e-149 531.6 463 62.6
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 6.3e-149 531.6 468 63.5
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.8e-148 530.0 446 65.5
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 1.8e-148 530.0 445 64.5
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.6e-147 526.9 447 63.1
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.0e-146 524.2 453 64.9
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 2.5e-145 519.6 475 61.3
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 2.1e-144 516.5 467 61.5
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.8e-143 513.5 452 61.7
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.5e-142 510.4 456 62.5
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 5.7e-142 508.4 515 56.1
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 6.3e-141 505.0 425 64.2
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.8e-140 503.4 458 59.2
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 7.0e-140 501.5 458 59.2
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 9.1e-140 501.1 455 61.5
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.7e-139 499.6 460 60.0
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 2.9e-138 496.1 445 58.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.8e-138 495.7 439 63.3
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 7.2e-137 491.5 457 59.3
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.2e-136 490.7 445 59.6
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.8e-136 489.6 470 57.2
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 8.0e-136 488.0 488 55.9
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.0e-135 487.6 445 59.3
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 1.4e-135 487.3 408 64.7
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 1.8e-135 486.9 459 58.2
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.3e-135 486.5 426 63.1
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.7e-133 480.3 448 60.3
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 5.4e-132 475.3 458 57.4
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 7.0e-132 474.9 458 57.4
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 4.5e-131 472.2 456 58.1
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-129 467.2 447 55.9
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-129 467.2 461 58.1
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 3.3e-129 466.1 456 57.9
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 3.3e-129 466.1 456 57.9
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 4.3e-129 465.7 443 58.0
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 2.3e-127 459.9 461 56.6
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 8.9e-127 458.0 457 56.5
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 6.4e-125 451.8 449 57.0
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.1e-124 451.1 454 55.5
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 7.0e-124 448.4 464 54.7
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.6e-123 447.2 471 53.7
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 4.6e-123 445.7 450 56.9
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.3e-122 444.1 454 55.1
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 4.3e-121 439.1 393 62.1
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.3e-119 433.3 483 53.0
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 8.1e-112 408.3 372 61.3
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.9e-108 397.1 463 52.3
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 3.8e-101 372.9 385 55.1
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.1e-99 367.1 314 65.9
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 3.5e-99 366.3 455 46.8
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 3.9e-98 362.8 374 56.1
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 4.9e-93 345.9 306 62.1
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 3.0e-90 336.7 492 41.9
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 3.6e-88 329.7 525 39.2
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 3.9e-82 309.7 477 41.5
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.5e-81 307.0 332 55.4
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.6e-67 261.2 606 33.3
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 2.5e-65 253.8 402 42.5
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 4.8e-48 196.4 467 31.7
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.0e-46 191.0 460 33.3
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.8e-42 177.9 496 31.0
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.8e-42 177.9 245 44.5
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.0e-41 174.5 226 45.6
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.4e-39 168.3 177 57.1
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 5.3e-39 166.4 245 45.3
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.8e-24 116.7 109 56.0
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.8e-23 114.8 80 73.8
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 7.0e-23 112.8 199 43.2
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 2.7e-22 110.9 199 42.7
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 7.2e-20 102.8 233 33.0
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.1e-19 101.3 80 58.8
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.7e-19 100.1 160 41.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 2.0e-17 94.7 133 46.6
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 2.6e-17 94.4 75 62.7
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 5.4e-15 86.7 133 49.6
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 3.9e-13 80.5 105 46.7
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 5.6e-12 76.6 107 45.8
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 8.0e-11 72.8 80 51.2
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 2.2e-08 64.7 92 44.6
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 8.3e-08 62.8 92 43.5
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 3.2e-07 60.8 34 79.4
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 1.6e-06 58.5 133 34.6


User provided reference genes

Program Settings