Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 9.6e-303 1042.7 539 100.0
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 8.1e-209 730.7 541 74.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.1e-185 652.9 561 66.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.2e-181 638.6 559 66.0
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.6e-175 619.4 555 64.3
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.1e-173 614.0 546 62.8
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.9e-170 603.2 547 63.3
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.3e-169 600.5 549 61.7
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.4e-168 596.3 559 62.4
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.5e-166 588.2 598 58.7
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.7e-161 573.5 546 60.8
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 1.4e-160 570.5 547 60.5
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.2e-159 567.4 537 60.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-158 563.9 552 58.7
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 8.5e-158 561.2 555 59.3
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.5e-157 559.7 509 62.9
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 3.3e-154 549.3 541 60.4
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 8.2e-153 544.7 554 57.8
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.1e-152 541.2 544 59.2
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.5e-151 540.4 544 59.2
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 2.0e-151 540.0 552 57.8
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.6e-151 539.7 541 58.6
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.5e-151 539.3 544 58.3
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 3.5e-151 539.3 548 56.9
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.9e-151 538.5 544 59.2
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.5e-149 533.1 552 57.4
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 4.7e-148 528.9 546 57.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.8e-147 526.9 548 56.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.3e-147 526.6 542 57.7
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 5.7e-146 521.9 550 56.5
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 5.7e-146 521.9 587 52.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.7e-145 519.2 543 56.7
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.4e-144 517.3 551 55.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 5.3e-144 515.4 548 56.8
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 9.1e-144 514.6 550 56.5
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 4.5e-143 512.3 553 55.5
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 9.4e-141 504.6 539 55.8
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.1e-140 503.4 545 54.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.0e-139 501.1 541 56.4
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 4.0e-139 499.2 548 54.4
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.7e-137 492.7 549 54.5
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.8e-136 490.3 546 54.2
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 9.1e-136 488.0 557 54.0
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 7.7e-135 485.0 553 53.9
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.7e-134 483.8 545 53.6
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.9e-133 480.3 544 53.5
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.4e-133 478.0 565 52.7
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.7e-132 476.5 540 52.6
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.6e-132 476.1 542 53.3
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 6.1e-132 475.3 548 54.9
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 8.0e-132 474.9 558 53.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.5e-130 470.7 548 54.2
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 9.8e-130 468.0 559 54.2
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.2e-129 466.8 555 55.1
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 3.7e-129 466.1 542 52.2
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.8e-129 465.7 553 52.1
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 8.3e-129 464.9 553 54.1
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.8e-128 463.8 620 47.9
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 4.1e-128 462.6 552 51.6
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.4e-128 462.2 534 53.0
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.7e-127 459.9 549 51.5
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 3.5e-127 459.5 570 52.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.9e-127 458.8 549 53.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 2.9e-126 456.4 557 51.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.5e-125 453.4 553 52.8
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 9.5e-125 451.4 555 50.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 3.6e-124 449.5 554 50.5
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 3.0e-123 446.4 543 51.4
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 4.0e-123 446.0 554 51.1
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 3.2e-120 436.4 565 49.7
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.1e-120 436.0 540 50.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.4e-120 435.6 540 50.6
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.0e-118 431.4 567 50.4
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 3.9e-118 429.5 552 50.9
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 5.6e-117 425.6 566 49.5
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 5.2e-115 419.1 556 48.7
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 4.4e-114 416.0 563 48.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 5.8e-114 415.6 557 49.2
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 2.2e-113 413.7 436 55.5
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 6.4e-113 412.1 542 48.5
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 6.4e-113 412.1 616 45.8
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 8.3e-113 411.8 560 48.2
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.4e-112 411.0 542 47.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 5.4e-112 409.1 574 46.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 6.0e-111 405.6 545 48.8
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 7.8e-111 405.2 545 47.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 3.9e-110 402.9 714 41.2
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 8.6e-110 401.7 558 46.8
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.9e-109 400.6 563 47.8
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.2e-108 397.9 537 46.2
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.1e-107 393.3 539 46.9
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 5.2e-107 392.5 561 46.7
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 7.5e-106 388.7 555 45.6
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.4e-104 383.6 540 46.9
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.0e-102 378.3 536 45.9
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 5.1e-102 375.9 559 45.6
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.6e-101 372.5 551 45.4
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 8.9e-99 365.2 535 44.1
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.6e-98 363.6 551 44.6
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 4.4e-98 362.8 551 44.3
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.5e-98 362.1 551 44.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.7e-97 360.9 542 44.6
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.7e-95 353.6 539 46.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.6e-95 352.8 542 44.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.3e-93 346.3 543 45.3
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 7.3e-93 345.5 542 45.8
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.6e-92 344.4 535 43.7
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.6e-92 343.2 542 44.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.9e-89 333.6 549 43.9
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.9e-89 333.6 549 43.9
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.2e-87 328.2 364 54.9
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.3e-81 308.1 587 38.5
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 4.2e-80 303.1 303 57.4
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 9.3e-80 302.0 304 56.6
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 5.4e-72 276.2 540 39.1
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.3e-70 271.6 537 39.1
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 2.5e-69 267.3 322 49.1
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.3e-69 266.5 548 38.7
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.3e-69 266.5 548 38.7
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 4.8e-60 236.5 402 42.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 6.1e-55 219.5 524 35.3
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.5e-53 214.9 583 34.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.4e-51 207.6 183 61.7
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.3e-51 206.5 400 40.2
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.0e-50 204.5 251 53.4
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 6.5e-49 199.5 604 31.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.5e-48 197.6 184 57.6
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.2e-48 197.2 416 37.5
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.3e-44 185.3 303 42.2
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.7e-39 166.8 286 40.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-33 148.3 231 44.6
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.0e-33 146.7 217 45.2
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 9.4e-32 142.5 719 27.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.7e-31 141.0 553 29.5
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.8e-27 128.3 121 61.2
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.2e-24 117.5 128 56.2
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 2.3e-22 111.3 430 26.5
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.7e-21 106.7 88 61.4
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.7e-20 104.0 196 39.8
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.3e-20 103.2 94 57.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.6e-18 98.6 257 33.9
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.7e-17 95.1 135 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.0e-17 93.6 528 27.1
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 5.5e-16 90.1 174 39.7
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.3e-14 84.7 228 33.3
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.7e-10 71.2 157 41.4
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.7e-10 71.2 187 34.8
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 9.5e-08 62.8 48 66.7
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 3.6e-07 60.8 107 40.2


User provided reference genes

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