Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31752 Davidia involucrata HOM05D002687 ORTHO05D022209 1.0e-192 676.8 392 100.0
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 5.6e-34 149.4 263 42.6
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-25 120.9 254 40.6
Actinidia32046 Actinidia chinensis HOM05D000182 ORTHO05D000112 4.4e-23 113.2 186 37.6
Cc06_g06470 Coffea canephora HOM05D022101 ORTHO05D022209 1.4e-21 108.2 261 33.3
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.5e-20 103.6 258 36.8
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 6.0e-20 102.8 194 30.4
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 5.1e-19 99.8 189 33.3
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 6.6e-19 99.4 246 34.1
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 1.1e-18 98.6 253 29.6
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 1.5e-18 98.2 181 34.8
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 1.9e-18 97.8 264 30.3
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 5.6e-18 96.3 179 31.3
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 1.3e-17 95.1 266 28.6
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 1.3e-17 95.1 186 32.8
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 1.6e-17 94.7 251 29.5
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 2.1e-17 94.4 163 35.0
Dinv31751 Davidia involucrata HOM05D002687 ORTHO05D002052 2.8e-17 94.0 50 84.0
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 3.6e-17 93.6 243 28.4
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 3.6e-17 93.6 252 30.6
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 6.2e-17 92.8 180 33.3
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 8.1e-17 92.4 273 30.4
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 8.1e-17 92.4 260 28.1
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 1.4e-16 91.7 178 31.5
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 1.8e-16 91.3 266 28.9
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.8e-16 91.3 189 29.1
DCAR_003063 Daucus carota HOM05D008136 ORTHO05D014468 2.4e-16 90.9 180 31.7
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 2.4e-16 90.9 254 37.8
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 3.1e-16 90.5 181 33.1
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 4.0e-16 90.1 149 37.6
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 4.0e-16 90.1 266 27.1
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.9e-16 89.4 257 29.2
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 1.2e-15 88.6 156 32.7
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 1.5e-15 88.2 257 26.8
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 2.6e-15 87.4 262 36.3
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 7.6e-15 85.9 252 28.2
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 9.9e-15 85.5 240 30.4
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 1.7e-14 84.7 280 30.7
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.7e-14 84.7 259 27.8
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 2.2e-14 84.3 241 34.4
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 2.2e-14 84.3 174 31.0
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 4.9e-14 83.2 179 28.5
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.9e-14 83.2 267 34.1
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.1e-13 82.0 183 30.1
PGSC0003DMG400016421 Solanum tuberosum HOM05D012176 ORTHO05D014468 1.9e-13 81.3 174 32.2
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.4e-13 80.9 170 32.4
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 2.4e-13 80.9 184 29.3
Aqoxy1G00685 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 3.2e-13 80.5 183 30.1
CSS0036580 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 5.4e-13 79.7 248 30.2
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 1.2e-12 78.6 240 31.7
Nitab4.5_0000020g0110 Nicotiana tabacum HOM05D012176 ORTHO05D014468 1.2e-12 78.6 178 32.0
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 1.6e-12 78.2 163 27.6
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.6e-12 78.2 246 28.5
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 2.1e-12 77.8 249 28.1
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 2.7e-12 77.4 165 29.1
Nitab4.5_0002958g0020 Nicotiana tabacum HOM05D012176 ORTHO05D014468 3.5e-12 77.0 178 30.9
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.6e-12 76.6 244 30.3
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 6.0e-12 76.3 260 25.8
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 7.9e-12 75.9 261 28.0
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 1.0e-11 75.5 185 29.2
Sc12g0004850 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.0e-11 75.5 255 36.5
Haze_23313 Corylus avellana HOM05D002687 ORTHO05D002052 1.8e-11 74.7 251 29.9
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.8e-11 74.7 154 31.2
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 1.8e-11 74.7 202 28.2
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.8e-11 74.7 246 27.2
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.8e-11 74.7 224 26.8
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 2.3e-11 74.3 185 27.0
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 2.3e-11 74.3 248 25.0
Sopen01g003200 Solanum pennellii HOM05D022101 ORTHO05D022209 2.3e-11 74.3 183 26.2
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 2.3e-11 74.3 260 27.7
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 3.9e-11 73.6 263 33.8
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 3.9e-11 73.6 247 27.1
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.9e-11 73.6 239 39.7
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.9e-11 73.6 174 28.7
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 6.7e-11 72.8 263 25.9
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 6.7e-11 72.8 254 27.6
Migut.B00865 Erythranthe guttata HOM05D012176 ORTHO05D014468 6.7e-11 72.8 172 32.0
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.7e-11 72.8 242 31.4
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.7e-11 72.8 242 31.4
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 8.7e-11 72.4 242 28.5
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 8.7e-11 72.4 248 34.3
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 1.1e-10 72.0 241 32.4
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.1e-10 72.0 236 28.8
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 1.1e-10 72.0 254 28.0
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.5e-10 70.9 179 27.9
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.5e-10 70.9 179 27.9
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 2.5e-10 70.9 263 25.9
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 3.3e-10 70.5 250 27.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.3e-10 70.5 240 39.2
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 5.6e-10 69.7 189 29.1
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 7.4e-10 69.3 253 30.8
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 7.4e-10 69.3 253 30.8
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 9.6e-10 68.9 251 35.1
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 9.6e-10 68.9 176 28.4
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 1.3e-09 68.6 177 30.5
PGSC0003DMG400016432 Solanum tuberosum HOM05D022101 ORTHO05D022209 1.3e-09 68.6 183 24.6
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.6e-09 68.2 179 27.9
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 1.6e-09 68.2 243 25.9
Solyc11g068893.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.6e-09 68.2 248 28.6
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-09 67.8 53 52.8
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.8e-09 67.4 189 29.6
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 3.7e-09 67.0 246 34.1
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 4.8e-09 66.6 251 26.7
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 4.8e-09 66.6 251 26.7
Phvul.001G195100 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 6.2e-09 66.2 269 27.9
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 6.2e-09 66.2 255 27.8
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 8.1e-09 65.9 184 29.3
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 8.1e-09 65.9 169 28.4
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 1.1e-08 65.5 245 27.8
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 1.1e-08 65.5 184 31.5
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 1.4e-08 65.1 251 26.3
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 1.4e-08 65.1 251 26.3
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 1.4e-08 65.1 251 26.3
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.4e-08 64.3 179 27.4
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 2.4e-08 64.3 236 27.5
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.4e-08 64.3 174 27.6
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 3.1e-08 63.9 276 27.5
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 3.1e-08 63.9 185 29.2
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 3.1e-08 63.9 185 29.2
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 6.9e-08 62.8 238 25.6
Aqoxy1G00677 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 9.0e-08 62.4 185 28.1
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 9.0e-08 62.4 186 27.4
Sabra09G0012300 Salix brachista HOM05D002687 ORTHO05D002052 9.0e-08 62.4 182 26.9
Dinv12333 Davidia involucrata HOM05D000980 ORTHO05D000649 1.5e-07 61.6 180 28.3
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 1.5e-07 61.6 178 29.2
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 1.5e-07 61.6 264 28.8
Prupe.7G097000 Prunus persica HOM05D002687 ORTHO05D002052 1.5e-07 61.6 248 25.8
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 1.5e-07 61.6 234 36.8
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.5e-07 61.6 93 43.0
Migut.L01832 Erythranthe guttata HOM05D002687 ORTHO05D025319 2.0e-07 61.2 67 38.8
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.0e-07 61.2 197 26.9
Gohir.D09G131400 Gossypium hirsutum HOM05D008136 ORTHO05D002052 2.0e-07 61.2 187 26.2
Gorai.006G150000 Gossypium raimondii HOM05D008136 ORTHO05D002052 2.0e-07 61.2 187 26.2
CiPaw.04G111600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.6e-07 60.8 186 27.4
Manes.11G153200 Manihot esculenta HOM05D000980 ORTHO05D000649 2.6e-07 60.8 181 26.5
MD14G1037500 Malus domestica HOM05D002687 ORTHO05D002052 3.4e-07 60.5 177 29.9
FvH4_6g20210 Fragaria vesca HOM05D009874 ORTHO05D010825 4.5e-07 60.1 154 24.7
unitig_899.g15378 Utricularia gibba HOM05D002687 ORTHO05D002052 4.5e-07 60.1 245 33.9
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.8e-07 59.7 176 25.6
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 5.8e-07 59.7 188 28.7
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 5.8e-07 59.7 177 28.8
Lj4C249T6 Lonicera japonica HOM05D000973 ORTHO05D000652 5.8e-07 59.7 187 25.1
TAR636G0890 Trochodendron aralioides HOM05D002687 ORTHO05D002052 5.8e-07 59.7 174 26.4
unitig_27.g25123 Utricularia gibba HOM05D000738 ORTHO05D000675 5.8e-07 59.7 179 29.1
arahy.Tifrunner.gnm1.ann1.N0JQU4 Arachis hypogaea HOM05D002687 ORTHO05D002052 7.6e-07 59.3 163 23.9
VMungo1383G0618 Vigna mungo HOM05D008136 ORTHO05D002052 7.6e-07 59.3 185 28.6
FAN14G2012 Fragaria x ananassa HOM05D009874 ORTHO05D010825 9.9e-07 58.9 154 24.7
Prupe.7G096800 Prunus persica HOM05D009874 ORTHO05D010825 9.9e-07 58.9 194 25.8
Rhsim10G0186800 Rhododendron simsii HOM05D000973 ORTHO05D000652 9.9e-07 58.9 178 23.0
SGA_v2.0_scaffold184G40020 Striga asiatica HOM05D002687 ORTHO05D025319 9.9e-07 58.9 59 39.0
RcHm_v2.0_Chr3g0475751 Rosa chinensis HOM05D009874 ORTHO05D010825 1.3e-06 58.5 190 24.7
Cpa.g.sc129.12 Carica papaya HOM05D015120 ORTHO05D010666 1.7e-06 58.2 167 28.7
Gohir.A09G134801 Gossypium hirsutum HOM05D008136 ORTHO05D002052 1.7e-06 58.2 142 28.2
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 2.9e-06 57.4 177 28.2
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 2.9e-06 57.4 205 28.3
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 2.9e-06 57.4 181 25.4
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 3.8e-06 57.0 110 28.2
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 3.8e-06 57.0 174 25.3
FAN05G0496 Fragaria x ananassa HOM05D009874 ORTHO05D010825 3.8e-06 57.0 154 24.0
FAN05G5202 Fragaria x ananassa HOM05D009874 ORTHO05D010825 3.8e-06 57.0 154 24.0
BcaB01g05988 Brassica carinata HOM05D000980 ORTHO05D000649 4.9e-06 56.6 189 22.8
Potri.015G148200 Populus trichocarpa HOM05D000973 ORTHO05D000652 4.9e-06 56.6 187 24.6
SalBow5G5565 Salvia bowleyana HOM05D000139 ORTHO05D000103 4.9e-06 56.6 67 32.8
SEGI_16011 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 4.9e-06 56.6 200 22.0
SGA_v2.0_scaffold100G29631 Striga asiatica HOM05D002687 ORTHO05D002052 4.9e-06 56.6 252 24.6
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 4.9e-06 56.6 244 28.3
Thhalv10014557m.g Eutrema salsugineum HOM05D000980 ORTHO05D000649 6.4e-06 56.2 175 24.0
Phvul.006G083600 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 6.4e-06 56.2 183 26.2
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 6.4e-06 56.2 164 29.3
C03p03080 Brassica napus HOM05D000980 ORTHO05D000649 8.4e-06 55.8 189 22.2
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 8.4e-06 55.8 178 23.6


User provided reference genes

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