Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31697 Davidia involucrata HOM05D007825 ORTHO05D009693 7.5e-44 180.3 100 100.0
Rhsim03G0074400 Rhododendron simsii HOM05D001257 ORTHO05D007181 3.8e-27 124.8 96 72.9
GSVIVG01033861001 Vitis vinifera HOM05D007825 ORTHO05D009693 6.4e-27 124.0 100 70.0
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 1.7e-24 115.9 93 71.0
Cc06_g05960 Coffea canephora HOM05D007825 ORTHO05D009693 1.9e-23 112.5 88 72.7
Eucgr.A02998 Eucalyptus grandis HOM05D007825 ORTHO05D009693 1.6e-22 109.4 100 61.0
Lj5g0027478 Lotus japonicus HOM05D007825 ORTHO05D009693 2.8e-22 108.6 100 63.0
Cpa.g.sc5.6 Carica papaya HOM05D007825 ORTHO05D009693 3.6e-22 108.2 88 65.9
QL07p038635 Quercus lobata HOM05D007825 ORTHO05D009693 6.2e-22 107.5 99 61.6
Atru.chr2.2492 Acer truncatum HOM05D007825 ORTHO05D009693 1.2e-20 103.2 98 59.2
Medtr1g059820 Medicago truncatula HOM05D007825 ORTHO05D009693 4.5e-20 101.3 91 59.3
Prupe.7G104600 Prunus persica HOM05D007825 ORTHO05D009693 4.5e-20 101.3 101 61.4
Ca_00897_v3 Cicer arietinum L. HOM05D007825 ORTHO05D009693 5.8e-20 100.9 100 59.0
Glyma.13G154500 Glycine max HOM05D007825 ORTHO05D009693 7.6e-20 100.5 100 62.0
Thecc.05G090800 Theobroma cacao HOM05D007825 ORTHO05D009693 7.6e-20 100.5 90 61.1
TWI74G1133 Tripterygium wilfordii HOM05D007825 ORTHO05D009693 9.9e-20 100.1 88 63.6
Sabra16G0083000 Salix brachista HOM05D007825 ORTHO05D009693 2.9e-19 98.6 89 61.8
Potri.016G078700 Populus trichocarpa HOM05D007825 ORTHO05D009693 3.8e-19 98.2 88 62.5
Glyma.19G194978 Glycine max HOM05D007825 ORTHO05D009693 8.4e-19 97.1 89 65.2
Phvul.001G191100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 1.4e-18 96.3 89 64.0
Potri.006G211600 Populus trichocarpa HOM05D007825 ORTHO05D009693 2.4e-18 95.5 84 57.1
TPR.G9902 Trifolium pratense HOM05D007825 ORTHO05D009693 2.4e-18 95.5 87 56.3
MD12G1027000 Malus domestica HOM05D007825 ORTHO05D009693 7.1e-18 94.0 87 55.2
CiPaw.09G015200 Carya illinoinensis HOM05D007825 ORTHO05D009693 9.3e-18 93.6 99 55.6
Manes.09G054200 Manihot esculenta HOM05D007825 ORTHO05D009693 9.3e-18 93.6 88 60.2
Lalb_Chr17g0338831 Lupinus albus HOM05D007825 ORTHO05D009693 1.2e-17 93.2 88 62.5
Sopen09g004680 Solanum pennellii HOM05D007825 ORTHO05D009693 2.7e-17 92.0 87 52.9
Solyc09g009930.2 Solanum lycopersicum HOM05D007825 ORTHO05D009693 3.5e-17 91.7 83 54.2
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 4.6e-17 91.3 102 56.9
Lalb_Chr10g0096381 Lupinus albus HOM05D007825 ORTHO05D009693 4.6e-17 91.3 83 65.1
THA.LOC104799760 Tarenaya hassleriana HOM05D007825 ORTHO05D009693 7.9e-17 90.5 87 59.8
Lalb_Chr02g0154901 Lupinus albus HOM05D007825 ORTHO05D009693 1.0e-16 90.1 90 58.9
Peaxi162Scf00404g00115 Petunia axillaris HOM05D007825 ORTHO05D009693 1.0e-16 90.1 87 54.0
Psat3g207080 Pisum sativum HOM05D007825 ORTHO05D009693 1.0e-16 90.1 100 53.0
Duzib093G1765 Durio zibethinus HOM05D007825 ORTHO05D009693 1.8e-16 89.4 90 57.8
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 5.1e-16 87.8 84 52.4
PGSC0003DMG400008872 Solanum tuberosum HOM05D007825 ORTHO05D009693 8.7e-16 87.0 87 50.6
Migut.J01022 Erythranthe guttata HOM05D007825 ORTHO05D009693 2.5e-15 85.5 100 52.0
Glyma.09G026600 Glycine max HOM05D007825 ORTHO05D009693 2.5e-15 85.5 100 57.0
TAR633G2289 Trochodendron aralioides HOM05D007825 ORTHO05D009693 2.5e-15 85.5 103 50.5
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 3.3e-15 85.1 92 53.3
Cfa009073 Carpinus fangiana HOM05D007825 ORTHO05D009693 3.3e-15 85.1 104 55.8
EL10Ac7g16903 Beta vulgaris HOM05D007825 ORTHO05D009693 4.3e-15 84.7 101 53.5
FAN05G0267 Fragaria x ananassa HOM05D007825 ORTHO05D009693 5.6e-15 84.3 102 52.9
Aqoxy2G01123 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 1.3e-14 83.2 100 50.0
BcaB01g00352 Brassica carinata HOM05D007825 ORTHO05D009693 2.1e-14 82.4 83 56.6
BcaC07g39631 Brassica carinata HOM05D007825 ORTHO05D009693 2.1e-14 82.4 83 56.6
A09p45710 Brassica napus HOM05D007825 ORTHO05D009693 2.1e-14 82.4 83 56.6
C08p27910 Brassica napus HOM05D007825 ORTHO05D009693 2.1e-14 82.4 83 56.6
BolC8t50406H Brassica oleracea HOM05D007825 ORTHO05D009693 2.1e-14 82.4 83 56.6
BraA09t40032Z Brassica rapa HOM05D007825 ORTHO05D009693 2.1e-14 82.4 83 56.6
CARHR162440 Cardamine hirsuta HOM05D007825 ORTHO05D009693 2.1e-14 82.4 81 58.0
MD14G1027100 Malus domestica HOM05D007825 ORTHO05D009693 2.1e-14 82.4 95 50.5
Nn2g14176 Nelumbo nucifera HOM05D007825 ORTHO05D009693 2.1e-14 82.4 104 51.9
TAR623G0830 Trochodendron aralioides HOM05D007825 ORTHO05D009693 2.1e-14 82.4 106 46.2
arahy.Tifrunner.gnm1.ann1.S2NT6M Arachis hypogaea HOM05D007825 ORTHO05D009693 2.8e-14 82.0 84 54.8
Phvul.003G041100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 2.8e-14 82.0 100 52.0
SalBow3G1626 Salvia bowleyana HOM05D007825 ORTHO05D009693 2.8e-14 82.0 105 48.6
Sp5g09670 Schrenkiella parvula HOM05D007825 ORTHO05D009693 2.8e-14 82.0 100 54.0
AL5G33400 Arabidopsis lyrata HOM05D007825 ORTHO05D009693 6.2e-14 80.9 81 55.6
Thhalv10010896m.g Eutrema salsugineum HOM05D007825 ORTHO05D009693 6.2e-14 80.9 91 52.7
FAN14G3782 Fragaria x ananassa HOM05D007825 ORTHO05D009693 6.2e-14 80.9 102 51.0
Sc07g0005630 Simmondsia chinensis HOM05D007825 ORTHO05D009693 1.4e-13 79.7 83 53.0
COL.COLO4_29710 Corchorus olitorius HOM05D007825 ORTHO05D009693 1.8e-13 79.3 90 52.2
AT3G52620 Arabidopsis thaliana HOM05D007825 ORTHO05D009693 2.4e-13 79.0 81 55.6
FAN02G3309 Fragaria x ananassa HOM05D007825 ORTHO05D009693 4.0e-13 78.2 102 50.0
FAN14G2292 Fragaria x ananassa HOM05D007825 ORTHO05D009693 4.0e-13 78.2 102 50.0
CsaV3_3G037370 Cucumis sativus L. HOM05D007825 ORTHO05D009693 6.9e-13 77.4 93 53.8
arahy.Tifrunner.gnm1.ann1.24RTVW Arachis hypogaea HOM05D007825 ORTHO05D009693 9.0e-13 77.0 87 57.5
arahy.Tifrunner.gnm1.ann1.L43FYW Arachis hypogaea HOM05D007825 ORTHO05D009693 9.0e-13 77.0 87 57.5
ClCG10G018870 Citrullus lanatus HOM05D007825 ORTHO05D009693 9.0e-13 77.0 88 52.3
Glyma.10G074000 Glycine max HOM05D007825 ORTHO05D009693 1.5e-12 76.3 100 51.0
BcaB02g07824 Brassica carinata HOM05D007825 ORTHO05D009693 2.6e-12 75.5 83 53.0
MELO3C009481.2 Cucumis melo HOM05D007825 ORTHO05D009693 4.5e-12 74.7 89 52.8
Carub.0005s1904 Capsella rubella HOM05D007825 ORTHO05D009693 5.8e-12 74.3 81 53.1
AUR62006195 Chenopodium quinoa HOM05D007825 ORTHO05D009693 5.8e-12 74.3 96 44.8
DCAR_013397 Daucus carota HOM05D007825 ORTHO05D009693 5.8e-12 74.3 87 48.3
RcHm_v2.0_Chr3g0474201 Rosa chinensis HOM05D007825 ORTHO05D009693 5.8e-12 74.3 103 46.6
MBI17_g08331_MAGBIO Magnolia biondii HOM05D007825 ORTHO05D009693 1.0e-11 73.6 98 46.9
Ah.15g090680 Amaranthus hybridus HOM05D007825 ORTHO05D009693 2.9e-11 72.0 88 46.6
Hma1.2p1_3516F.1_g336516 Hydrangea macrophylla HOM05D020730 ORTHO05D009693 2.9e-11 72.0 98 43.9
Dinv21196 Davidia involucrata HOM05D007825 ORTHO05D009693 4.9e-11 71.2 67 61.2
unitig_578.g16364 Utricularia gibba HOM05D001354 ORTHO05D007486 4.9e-11 71.2 96 41.7
Aqoxy4G02759 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 6.5e-11 70.9 109 41.3
Aa31LG10G7690 Aethionema arabicum HOM05D007825 ORTHO05D009693 1.4e-10 69.7 89 48.3
AUR62037026 Chenopodium quinoa HOM05D007825 ORTHO05D009693 1.4e-10 69.7 96 43.8
Sed0008191 Sechium edule HOM05D007825 ORTHO05D009693 1.9e-10 69.3 104 42.3
DCAR_013400 Daucus carota HOM05D007825 ORTHO05D009693 9.3e-10 67.0 85 42.4
MD12G1088600 Malus domestica HOM05D007825 ORTHO05D009693 1.1e-07 60.1 88 44.3
Nn6g34873 Nelumbo nucifera HOM05D007825 ORTHO05D009693 2.5e-07 58.9 105 43.8
Dinv42544 Davidia involucrata HOM05D020730 ORTHO05D009693 3.3e-07 58.5 98 45.9
Actinidia37078 Actinidia chinensis HOM05D020730 ORTHO05D009693 4.3e-07 58.2 98 38.8
CSS0048375 Camellia sinensis var. sinensis HOM05D020730 ORTHO05D009693 4.3e-07 58.2 106 37.7
Rhsim13G0112400 Rhododendron simsii HOM05D020730 ORTHO05D009693 5.7e-07 57.8 73 46.6
Migut.D02439 Erythranthe guttata HOM05D044387 ORTHO05D009693 9.6e-07 57.0 104 43.3
SalBow7G1966 Salvia bowleyana HOM05D007825 ORTHO05D009693 6.2e-06 54.3 63 47.6
Sed0011665 Sechium edule HOM05D007825 ORTHO05D009693 6.2e-06 54.3 55 54.5


User provided reference genes

Program Settings