Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31672 Davidia involucrata HOM05D002488 ORTHO05D002613 4.4e-95 351.3 177 100.0
Dinv20601 Davidia involucrata HOM05D002488 ORTHO05D002613 1.1e-21 107.5 72 77.8
Dinv01306 Davidia involucrata HOM05D002488 ORTHO05D002613 1.2e-20 104.0 72 76.4
Dinv38530 Davidia involucrata HOM05D002488 ORTHO05D002613 3.5e-20 102.4 72 75.0
Actinidia08959 Actinidia chinensis HOM05D002488 ORTHO05D002613 1.6e-17 93.6 72 68.1
Sabra12G0061500 Salix brachista HOM05D002488 ORTHO05D002613 3.7e-17 92.4 87 57.5
TWI23G0090 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 8.2e-17 91.3 79 60.8
Potri.015G083800 Populus trichocarpa HOM05D002488 ORTHO05D002613 1.8e-16 90.1 72 62.5
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 4.1e-16 89.0 72 62.5
Manes.06G109900 Manihot esculenta HOM05D002488 ORTHO05D002613 6.9e-16 88.2 72 65.3
Nn2g14939 Nelumbo nucifera HOM05D002488 ORTHO05D002613 1.5e-15 87.0 72 61.1
CSS0004341 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 2.6e-15 86.3 72 65.3
CiPaw.12G030700 Carya illinoinensis HOM05D002488 ORTHO05D002613 3.4e-15 85.9 72 59.7
Lj5C129G10 Lonicera japonica HOM05D002488 ORTHO05D002613 4.5e-15 85.5 72 62.5
ClCG06G017390 Citrullus lanatus HOM05D002488 ORTHO05D002613 7.6e-15 84.7 72 61.1
Rhsim12G0167800 Rhododendron simsii HOM05D002488 ORTHO05D002613 7.6e-15 84.7 72 56.9
Potri.012G085600 Populus trichocarpa HOM05D002488 ORTHO05D002613 3.8e-14 82.4 72 58.3
Thecc.03G025300 Theobroma cacao HOM05D002488 ORTHO05D002613 3.8e-14 82.4 72 58.3
vmacro16644 Vaccinium macrocarpon HOM05D002488 ORTHO05D002613 3.8e-14 82.4 71 62.0
FAN27G2309 Fragaria x ananassa HOM05D002488 ORTHO05D002613 5.0e-14 82.0 72 55.6
MELO3C026254.2 Cucumis melo HOM05D002488 ORTHO05D002613 8.4e-14 81.3 83 53.0
CsaV3_1G001020 Cucumis sativus L. HOM05D002488 ORTHO05D002613 8.4e-14 81.3 72 58.3
Manes.14G060900 Manihot esculenta HOM05D002488 ORTHO05D002613 8.4e-14 81.3 72 58.3
Prupe.8G003900 Prunus persica HOM05D002488 ORTHO05D002613 8.4e-14 81.3 72 54.2
Duzib205G2026 Durio zibethinus HOM05D002488 ORTHO05D002613 1.1e-13 80.9 72 58.3
PGR083G2220 Punica granatum HOM05D002488 ORTHO05D002613 1.1e-13 80.9 72 55.6
CANSAT80G1691 Cannabis sativa HOM05D002488 ORTHO05D002613 1.9e-13 80.1 72 54.2
Haze_07582 Corylus avellana HOM05D002488 ORTHO05D002613 1.9e-13 80.1 72 54.2
Cfa019211 Carpinus fangiana HOM05D002488 ORTHO05D002613 2.5e-13 79.7 72 54.2
Duzib068G0576 Durio zibethinus HOM05D002488 ORTHO05D002613 2.5e-13 79.7 72 58.3
FAN20G0001 Fragaria x ananassa HOM05D002488 ORTHO05D002613 2.5e-13 79.7 72 54.2
Lj9A442T65 Lonicera japonica HOM05D002488 ORTHO05D002613 2.5e-13 79.7 72 55.6
FAN19G3027 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.2e-13 79.3 72 52.8
RcHm_v2.0_Chr6g0249641 Rosa chinensis HOM05D002488 ORTHO05D002613 3.2e-13 79.3 72 52.8
CiPaw.11G020700 Carya illinoinensis HOM05D002488 ORTHO05D002613 4.2e-13 79.0 72 54.2
Cpa.g.sc159.31 Carica papaya HOM05D002488 ORTHO05D002613 5.5e-13 78.6 72 55.6
FAN25G0877 Fragaria x ananassa HOM05D000023 ORTHO05D010681 5.5e-13 78.6 66 56.1
FAN25G2356 Fragaria x ananassa HOM05D000023 ORTHO05D010681 5.5e-13 78.6 66 56.1
FvH4_2g00400 Fragaria vesca HOM05D002488 ORTHO05D002613 7.2e-13 78.2 72 52.8
Sed0021301 Sechium edule HOM05D002488 ORTHO05D002613 7.2e-13 78.2 72 55.6
COL.COLO4_35718 Corchorus olitorius HOM05D002488 ORTHO05D002613 9.3e-13 77.8 72 56.9
QL10p006915 Quercus lobata HOM05D002488 ORTHO05D002613 9.3e-13 77.8 72 52.8
MD10G1041600 Malus domestica HOM05D002488 ORTHO05D002613 1.2e-12 77.4 72 54.2
Atru.chr9.2572 Acer truncatum HOM05D002488 ORTHO05D002613 1.6e-12 77.0 72 54.2
FAN24G3477 Fragaria x ananassa HOM05D002488 ORTHO05D002613 1.6e-12 77.0 72 52.8
Gohir.A12G199300 Gossypium hirsutum HOM05D002488 ORTHO05D002613 1.6e-12 77.0 72 58.3
Gohir.D12G202100 Gossypium hirsutum HOM05D002488 ORTHO05D002613 1.6e-12 77.0 72 58.3
Gorai.008G217100 Gossypium raimondii HOM05D002488 ORTHO05D002613 1.6e-12 77.0 72 58.3
Nn4g22610 Nelumbo nucifera HOM05D002488 ORTHO05D002613 1.6e-12 77.0 72 52.8
Nitab4.5_0001793g0070 Nicotiana tabacum HOM05D002488 ORTHO05D002613 1.6e-12 77.0 72 56.9
MBI04_g31204_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 2.1e-12 76.6 72 55.6
Sed0014577 Sechium edule HOM05D002488 ORTHO05D002613 2.7e-12 76.3 72 55.6
CAN.G338.29 Capsicum annuum HOM05D002488 ORTHO05D002613 3.5e-12 75.9 72 55.6
Nitab4.5_0003703g0050 Nicotiana tabacum HOM05D002488 ORTHO05D002613 6.1e-12 75.1 72 55.6
FAN02G0423 Fragaria x ananassa HOM05D002488 ORTHO05D002613 1.3e-11 73.9 68 52.9
Sc04g0001530 Simmondsia chinensis HOM05D002488 ORTHO05D002613 1.3e-11 73.9 72 50.0
Eucgr.B00224 Eucalyptus grandis HOM05D002488 ORTHO05D002613 1.8e-11 73.6 72 52.8
Sopen03g031370 Solanum pennellii HOM05D002488 ORTHO05D002613 6.7e-11 71.6 76 50.0
MD05G1037800 Malus domestica HOM05D002488 ORTHO05D002613 8.7e-11 71.2 72 50.0
Solyc03g112270.3 Solanum lycopersicum HOM05D002488 ORTHO05D002613 1.1e-10 70.9 76 50.0
PGSC0003DMG400018117 Solanum tuberosum HOM05D002488 ORTHO05D002613 4.3e-10 68.9 72 50.0
ATR0824G118 Amborella trichopoda HOM05D002488 ORTHO05D002613 7.4e-10 68.2 69 47.8
Lalb_Chr13g0297591 Lupinus albus HOM05D002488 ORTHO05D002613 1.3e-09 67.4 72 47.2
Cc04_g11610 Coffea canephora HOM05D002488 ORTHO05D002613 2.2e-09 66.6 72 54.2
TWI39G1221 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 2.2e-09 66.6 73 52.1
Ca_14275_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 3.7e-09 65.9 72 43.1
FAN05G0462 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.7e-09 65.9 65 47.7
VMungo1215G1015 Vigna mungo HOM05D002488 ORTHO05D002613 3.7e-09 65.9 71 46.5
Phvul.003G204700 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 8.2e-09 64.7 71 46.5
SHI17281 Sapria himalayana HOM05D002488 ORTHO05D002613 8.2e-09 64.7 72 50.0
arahy.Tifrunner.gnm1.ann1.A1CNSV Arachis hypogaea HOM05D002488 ORTHO05D002613 4.1e-08 62.4 72 41.7
Lalb_Chr23g0273331 Lupinus albus HOM05D002488 ORTHO05D002613 4.1e-08 62.4 72 45.8
CDE02G2064 Ceratophyllum demersum HOM05D002488 ORTHO05D002613 5.3e-08 62.0 72 44.4
Gorai.013G119900 Gossypium raimondii HOM05D002488 ORTHO05D002613 5.3e-08 62.0 69 47.8
Lalb_Chr08g0236741 Lupinus albus HOM05D002488 ORTHO05D002613 5.3e-08 62.0 69 49.3
CSS0018025 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 6.9e-08 61.6 52 63.5
CSS0031964 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 6.9e-08 61.6 52 63.5
Glyma.05G041400 Glycine max HOM05D002488 ORTHO05D002613 6.9e-08 61.6 70 44.3
Nitab4.5_0000025g0310 Nicotiana tabacum HOM05D002488 ORTHO05D002613 6.9e-08 61.6 73 54.8
Ciclev10019747m.g Citrus clementina HOM05D002488 ORTHO05D002613 9.0e-08 61.2 71 47.9
EL10Ac5g10659 Beta vulgaris HOM05D002488 ORTHO05D002613 1.2e-07 60.8 59 55.9
Aqoxy3G01216 Aquilegia oxysepala HOM05D002488 ORTHO05D002613 1.5e-07 60.5 62 48.4
Nitab4.5_0001566g0020 Nicotiana tabacum HOM05D002488 ORTHO05D002613 1.5e-07 60.5 73 53.4
Ah.11g051140 Amaranthus hybridus HOM05D002488 ORTHO05D002613 2.0e-07 60.1 59 54.2
arahy.Tifrunner.gnm1.ann1.9WU370 Arachis hypogaea HOM05D002488 ORTHO05D002613 2.0e-07 60.1 70 44.3
arahy.Tifrunner.gnm1.ann1.ZI7BUH Arachis hypogaea HOM05D002488 ORTHO05D002613 2.0e-07 60.1 67 44.8
AUR62008148 Chenopodium quinoa HOM05D002488 ORTHO05D002613 4.5e-07 58.9 72 51.4
Dinv20858 Davidia involucrata HOM05D002488 ORTHO05D002613 4.5e-07 58.9 49 65.3
VMungo1309G0915 Vigna mungo HOM05D002488 ORTHO05D002613 4.5e-07 58.9 94 37.2
Lj1g0012260 Lotus japonicus HOM05D002488 ORTHO05D002613 7.7e-07 58.2 72 41.7
AUR62028730 Chenopodium quinoa HOM05D002488 ORTHO05D002613 1.0e-06 57.8 72 50.0
Glyma.04G188000 Glycine max HOM05D002488 ORTHO05D002613 1.0e-06 57.8 94 36.2
Medtr3g076990 Medicago truncatula HOM05D002488 ORTHO05D002613 1.0e-06 57.8 69 44.9
Lj4g0015296 Lotus japonicus HOM05D002488 ORTHO05D002613 1.3e-06 57.4 72 40.3
Phvul.009G174300 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 1.7e-06 57.0 72 41.7
Ah.02g110840 Amaranthus hybridus HOM05D002488 ORTHO05D002613 2.9e-06 56.2 59 52.5
Nn6g31862 Nelumbo nucifera HOM05D000001 ORTHO05D009995 2.9e-06 56.2 27 92.6
TPR.G21814 Trifolium pratense HOM05D002488 ORTHO05D002613 2.9e-06 56.2 72 41.7
Ca_16132_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 5.0e-06 55.5 72 43.1
Psat0s3170g0040 Pisum sativum HOM05D002488 ORTHO05D002613 5.0e-06 55.5 72 41.7
ECA246G1629 Erigeron canadensis HOM05D002176 ORTHO05D002598 6.5e-06 55.1 51 56.9
Hund02784 Selenicereus undatus HOM05D002488 ORTHO05D002613 6.5e-06 55.1 71 45.1
Hma1.2p1_0060F.1_g033110 Hydrangea macrophylla HOM05D000001 ORTHO05D009995 8.5e-06 54.7 27 88.9
Medtr4g105010 Medicago truncatula HOM05D002488 ORTHO05D002613 8.5e-06 54.7 70 38.6
PSO339G4325 Papaver somniferum HOM05D002488 ORTHO05D002613 8.5e-06 54.7 73 46.6


User provided reference genes

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