Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 2.9e-296 1021.1 525 100.0
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 8.7e-224 780.4 526 78.9
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 2.9e-126 456.4 506 54.5
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 1.8e-120 437.2 514 52.5
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 2.3e-120 436.8 540 51.9
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.1e-116 423.7 501 52.9
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 8.1e-113 411.8 569 48.0
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 9.9e-111 404.8 494 52.6
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 1.9e-109 400.6 514 50.6
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 1.3e-107 394.4 498 49.6
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 6.6e-107 392.1 496 51.4
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 2.4e-104 383.6 482 51.0
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 2.4e-104 383.6 481 50.9
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 6.9e-104 382.1 499 49.3
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 3.4e-103 379.8 521 50.3
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 9.9e-103 378.3 498 48.8
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.7e-102 377.5 505 47.7
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 8.4e-102 375.2 506 47.8
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 1.9e-101 374.0 489 50.1
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.2e-101 373.2 523 46.7
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 7.1e-101 372.1 500 48.0
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 7.1e-101 372.1 513 48.3
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.3e-97 361.3 554 44.0
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 1.1e-96 358.2 481 49.1
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 2.4e-96 357.1 489 47.9
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 5.3e-96 355.9 547 47.2
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 1.5e-95 354.4 522 45.0
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.7e-91 339.0 503 45.7
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 6.7e-91 339.0 419 51.1
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 3.5e-84 316.6 399 50.9
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 2.3e-83 313.9 481 44.1
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 2.5e-82 310.5 620 41.8
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 1.2e-79 301.6 501 44.1
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 1.0e-78 298.5 490 43.3
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 5.5e-77 292.7 465 42.6
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 2.7e-76 290.4 394 48.2
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.6e-76 290.0 395 48.4
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 4.3e-74 283.1 547 39.5
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.7e-73 280.0 395 47.6
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 1.1e-72 278.5 478 44.1
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 5.0e-70 269.6 534 41.2
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 7.2e-69 265.8 377 48.3
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 7.2e-69 265.8 514 38.5
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 6.1e-68 262.7 478 42.3
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 7.9e-68 262.3 486 40.3
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 1.7e-65 254.6 591 36.5
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 2.2e-65 254.2 289 57.4
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 1.4e-64 251.5 508 38.8
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 2.4e-64 250.8 510 38.6
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 2.6e-63 247.3 509 39.1
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 3.4e-63 246.9 511 38.0
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 1.3e-62 245.0 493 39.8
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 2.9e-62 243.8 510 37.5
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 1.4e-61 241.5 487 39.6
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 2.7e-60 237.3 412 40.3
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 7.9e-60 235.7 516 37.0
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 1.8e-59 234.6 483 39.5
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 6.7e-59 232.6 477 39.0
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 8.8e-59 232.3 478 38.9
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 1.1e-58 231.9 498 39.4
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 2.6e-58 230.7 480 37.5
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 6.3e-57 226.1 381 39.1
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 6.3e-57 226.1 500 36.4
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 1.1e-56 225.3 482 38.2
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 1.1e-56 225.3 538 35.9
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 7.0e-56 222.6 373 39.4
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 9.1e-56 222.2 510 37.6
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 2.0e-55 221.1 510 37.5
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 2.6e-55 220.7 507 37.3
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 3.5e-55 220.3 516 34.7
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 2.9e-54 217.2 526 37.6
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 1.9e-53 214.5 368 42.1
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 3.2e-53 213.8 526 36.9
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 9.4e-53 212.2 389 42.2
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.6e-52 211.5 399 41.1
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 4.7e-52 209.9 489 36.2
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 6.1e-52 209.5 509 36.1
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 1.5e-50 204.9 489 35.8
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 6.3e-49 199.5 422 36.3
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 1.4e-48 198.4 313 43.8
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 1.4e-48 198.4 474 36.1
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 2.4e-48 197.6 484 37.0
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 2.4e-48 197.6 397 40.6
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 2.4e-48 197.6 397 40.6
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 1.0e-46 192.2 488 34.6
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 8.5e-46 189.1 395 39.5
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.5e-42 178.3 504 32.9
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 2.8e-41 174.1 236 50.8
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.6e-39 168.3 500 34.8
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 3.5e-39 167.2 320 36.9
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 3.6e-36 157.1 399 35.3
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 6.1e-36 156.4 367 37.9
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 1.4e-35 155.2 476 34.7
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 8.8e-35 152.5 398 35.2
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 1.3e-33 148.7 339 37.5
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 5.4e-32 143.3 341 37.2
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 2.0e-31 141.4 486 32.5
Actinidia02438 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.2e-28 132.1 244 39.3
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 1.0e-27 129.0 342 36.5
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 3.0e-27 127.5 360 33.6
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 4.4e-26 123.6 314 37.3
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 2.2e-25 121.3 204 43.6
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 2.2e-25 121.3 371 34.2
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 1.1e-24 119.0 480 30.6
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 2.0e-23 114.8 206 41.3
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 4.6e-23 113.6 237 37.6
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 1.3e-22 112.1 137 52.6
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.3e-22 112.1 178 44.4
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 5.0e-22 110.2 351 30.2
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 5.0e-22 110.2 137 51.8
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 1.2e-20 105.5 244 36.9
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 4.7e-20 103.6 334 30.2
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.3e-19 101.3 169 45.6
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 6.8e-19 99.8 375 29.9
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 6.4e-17 93.2 84 64.3
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 1.4e-16 92.0 163 41.7
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 2.7e-15 87.8 202 40.1
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 2.7e-15 87.8 91 58.2
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 8.6e-14 82.8 254 34.6
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 2.5e-13 81.3 205 33.2
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 4.0e-11 73.9 188 38.8
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.2e-10 72.4 143 44.1
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 4.4e-10 70.5 85 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 1.4e-08 65.5 245 29.0
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 7.1e-08 63.2 161 37.9
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 1.2e-07 62.4 148 37.8
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 4.6e-07 60.5 50 64.0


User provided reference genes

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