Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 7.0e-176 620.5 319 100.0
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.8e-86 323.6 288 63.2
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.1e-85 320.9 306 63.4
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.2e-79 300.8 300 59.0
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.1e-79 300.1 314 55.4
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.1e-79 300.1 300 58.3
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 2.7e-79 299.7 308 56.2
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 7.4e-77 291.6 308 55.5
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.3e-76 290.8 308 55.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.2e-76 290.0 303 58.1
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.2e-76 290.0 303 59.4
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 9.1e-75 284.6 314 53.2
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.2e-74 284.3 315 53.7
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.9e-74 282.0 315 51.7
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.7e-71 273.1 304 54.9
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.7e-68 262.7 289 54.7
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.8e-68 262.3 306 52.0
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 3.8e-65 252.7 307 50.5
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.2e-64 249.6 322 49.1
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.2e-64 249.6 322 46.6
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.2e-64 249.6 320 50.6
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.5e-64 248.8 322 49.1
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 5.5e-64 248.8 308 49.0
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 9.4e-64 248.1 322 49.1
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.6e-63 247.3 335 50.7
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.7e-63 246.5 320 48.8
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.1e-63 245.4 323 48.9
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.8e-62 243.8 319 48.9
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-62 243.8 322 46.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 5.2e-62 242.3 319 47.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 6.7e-62 241.9 327 47.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 8.8e-62 241.5 324 48.8
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 9.7e-61 238.0 313 49.2
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.7e-60 237.3 315 49.2
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 6.3e-60 235.3 317 45.4
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.1e-59 232.6 315 47.6
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.1e-59 232.6 315 47.3
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 7.0e-59 231.9 320 47.5
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 5.9e-58 228.8 341 46.3
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 5.9e-58 228.8 322 46.0
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 5.9e-58 228.8 328 47.0
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.2e-57 226.9 319 47.3
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 7.2e-56 221.9 306 47.7
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 9.4e-56 221.5 312 44.9
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.2e-55 221.1 324 48.5
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 4.7e-55 219.2 303 44.2
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 4.7e-55 219.2 313 44.4
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 8.0e-55 218.4 310 45.5
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.0e-54 218.0 302 43.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 3.4e-53 213.0 314 43.9
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.4e-53 212.6 314 43.3
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.0e-51 205.3 326 42.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 9.1e-51 204.9 296 48.3
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 9.1e-51 204.9 300 49.0
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.2e-50 204.5 296 47.3
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 7.7e-50 201.8 317 41.0
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.3e-49 201.1 305 45.6
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.9e-49 199.9 317 42.0
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 5.0e-49 199.1 317 40.7
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.1e-48 198.0 332 41.3
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 3.2e-48 196.4 333 41.1
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 5.5e-48 195.7 314 43.9
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 5.5e-48 195.7 317 43.2
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 2.7e-47 193.4 314 42.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.6e-47 193.0 316 40.5
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 4.7e-47 192.6 309 45.3
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.7e-47 192.6 309 41.4
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.4e-46 191.0 318 41.8
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 4.0e-46 189.5 306 43.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 5.2e-46 189.1 327 41.9
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 8.8e-46 188.3 305 44.6
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.2e-45 188.0 305 43.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.5e-45 187.6 303 42.6
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.4e-45 186.4 277 46.6
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.4e-45 186.0 323 41.2
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 4.9e-44 182.6 319 41.4
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 4.9e-44 182.6 311 42.1
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 4.9e-44 182.6 319 41.1
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 7.0e-43 178.7 310 41.9
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 7.0e-43 178.7 262 45.0
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.3e-41 173.7 297 40.7
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 2.9e-41 173.3 318 39.6
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 3.8e-41 172.9 275 45.5
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.0e-41 172.6 297 39.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.1e-40 171.4 303 41.6
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 4.3e-40 169.5 331 41.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 2.8e-39 166.8 313 40.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.8e-39 166.8 304 40.8
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.7e-39 166.0 317 41.6
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.4e-38 164.5 329 39.5
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 7.5e-37 158.7 261 44.8
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-36 157.5 318 39.0
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 4.9e-36 156.0 319 37.3
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 6.4e-36 155.6 307 39.4
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 6.4e-36 155.6 307 39.4
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 6.4e-36 155.6 307 38.8
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 6.4e-36 155.6 262 45.4
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 8.3e-36 155.2 318 38.4
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.8e-35 154.1 333 35.1
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-35 154.1 308 39.3
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-35 154.1 308 39.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 2.4e-35 153.7 336 36.3
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 2.4e-35 153.7 316 35.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.6e-34 151.0 337 34.7
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.0e-34 150.6 308 37.0
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 7.8e-34 148.7 337 34.4
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 7.8e-34 148.7 303 34.3
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.7e-33 147.5 176 47.7
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.0e-33 146.7 317 35.0
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 3.9e-33 146.4 336 33.9
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 3.9e-33 146.4 322 37.6
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 8.6e-33 145.2 283 38.2
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.5e-32 144.4 317 36.0
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 7.3e-32 142.1 312 35.6
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.6e-31 139.8 292 39.0
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.6e-31 139.8 190 45.8
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.7e-31 139.4 298 38.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 5.2e-30 136.0 302 38.1
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 8.9e-30 135.2 302 34.1
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.5e-29 134.4 304 35.5
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 4.4e-29 132.9 302 31.5
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 5.8e-29 132.5 286 39.5
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 5.8e-29 132.5 284 38.4
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 9.8e-29 131.7 294 36.7
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 9.8e-29 131.7 292 38.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.3e-28 131.3 282 35.5
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.7e-28 131.0 298 36.9
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.9e-28 129.4 302 31.5
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 2.4e-27 127.1 261 37.9
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.1e-27 126.3 294 38.4
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 5.4e-27 125.9 297 38.0
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.6e-26 124.4 296 36.5
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.6e-26 124.4 296 36.5
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.6e-26 124.4 296 36.5
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.7e-26 123.6 268 38.4
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 6.0e-26 122.5 183 38.8
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.0e-25 119.4 272 39.0
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.3e-24 116.7 293 34.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 9.5e-24 115.2 178 40.4
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 3.6e-23 113.2 261 37.2
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 1.8e-22 110.9 248 38.3
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.3e-22 110.5 289 35.6
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.5e-21 107.8 259 35.5
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 2.0e-21 107.5 290 32.8
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 2.9e-20 103.6 270 38.1
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 3.7e-20 103.2 194 36.1
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.1e-19 99.0 154 39.6
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.6e-18 97.8 236 35.2
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 3.6e-15 86.7 286 32.2
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.3e-14 84.0 223 34.1
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 4.4e-13 79.7 110 41.8
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.3e-12 78.2 153 37.3
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.2e-10 71.6 177 37.3
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 5.1e-09 66.2 290 29.3
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 2.8e-07 60.5 287 28.6
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 4.7e-07 59.7 187 28.9


User provided reference genes

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