Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.9e-125 451.8 216 100.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 3.3e-97 358.6 245 75.1
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.3e-93 346.7 241 72.2
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 5.0e-93 344.7 247 72.9
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.1e-92 343.6 239 72.8
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.6e-91 339.7 239 72.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 1.4e-90 336.7 244 68.9
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.8e-90 336.3 244 69.7
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 4.4e-89 331.6 241 69.3
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 2.2e-88 329.3 231 72.3
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.8e-88 328.2 242 68.2
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.4e-87 326.6 244 68.9
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 1.8e-87 326.2 241 68.9
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 5.4e-87 324.7 239 68.2
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 7.0e-87 324.3 239 68.6
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 7.0e-87 324.3 239 67.4
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.1e-87 323.9 235 70.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 2.7e-86 322.4 247 68.0
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 4.5e-86 321.6 239 68.6
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 3.8e-85 318.5 239 68.2
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.8e-85 318.5 239 68.2
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.8e-85 318.5 239 68.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 6.5e-85 317.8 239 68.2
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.5e-84 316.6 244 66.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 2.5e-84 315.8 239 66.5
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 3.2e-84 315.5 237 67.1
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.2e-84 315.5 245 67.3
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 5.5e-84 314.7 246 65.4
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 1.2e-83 313.5 238 66.8
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 6.1e-83 311.2 238 67.2
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.4e-82 310.1 245 66.1
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 4.0e-82 308.5 242 65.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 5.2e-82 308.1 241 65.1
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 8.8e-82 307.4 238 64.7
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 8.8e-82 307.4 238 65.5
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.2e-81 307.0 239 66.5
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 1.2e-81 307.0 240 65.0
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 2.0e-81 306.2 239 66.5
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 2.6e-81 305.8 238 65.5
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 2.6e-81 305.8 239 64.4
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 2.6e-81 305.8 237 65.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 3.4e-81 305.4 237 63.7
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 5.7e-81 304.7 375 46.9
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 5.7e-81 304.7 240 65.0
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 5.7e-81 304.7 241 63.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 1.3e-80 303.5 238 63.9
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.7e-80 303.1 238 64.7
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 2.2e-80 302.8 238 65.1
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 2.2e-80 302.8 238 64.7
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 2.8e-80 302.4 240 64.6
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 3.7e-80 302.0 244 63.5
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 4.9e-80 301.6 237 64.1
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 8.3e-80 300.8 238 64.7
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 8.3e-80 300.8 241 64.3
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 8.3e-80 300.8 238 63.0
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 1.1e-79 300.4 241 63.1
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.8e-79 299.7 235 63.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 2.4e-79 299.3 240 63.3
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 2.4e-79 299.3 241 63.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 3.1e-79 298.9 239 64.0
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 7.0e-79 297.7 241 63.9
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.2e-78 297.0 239 63.2
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 1.6e-78 296.6 239 63.2
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.6e-78 296.6 241 62.2
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 2.7e-78 295.8 242 62.8
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 3.5e-78 295.4 238 61.8
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 3.5e-78 295.4 238 60.9
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 4.5e-78 295.0 240 64.2
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 5.9e-78 294.7 244 62.7
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 2.9e-77 292.4 244 62.3
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 3.8e-77 292.0 243 62.1
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 3.8e-77 292.0 245 61.6
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 1.1e-76 290.4 240 61.2
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 1.5e-76 290.0 240 62.1
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 1.9e-76 289.7 243 61.7
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 4.3e-76 288.5 240 62.1
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 4.3e-76 288.5 239 62.3
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 5.6e-76 288.1 238 61.8
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 9.5e-76 287.3 241 61.8
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.2e-75 287.0 327 49.8
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.6e-75 285.4 241 60.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 4.7e-75 285.0 238 60.9
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 4.7e-75 285.0 239 61.9
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 6.1e-75 284.6 240 62.1
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 8.0e-75 284.3 248 60.9
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 1.4e-74 283.5 240 60.0
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 1.2e-73 280.4 242 59.5
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.5e-73 280.0 239 60.3
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.5e-73 280.0 239 61.1
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 2.2e-72 276.2 278 54.7
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.9e-72 275.8 240 62.1
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.1e-71 273.9 242 58.7
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 1.4e-71 273.5 240 57.9
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 1.8e-71 273.1 259 56.8
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 5.4e-71 271.6 242 57.0
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 7.8e-70 267.7 241 58.5
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 7.8e-70 267.7 243 55.1
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.5e-68 263.5 219 57.1
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 1.2e-67 260.4 240 54.2
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 3.6e-67 258.8 274 52.6
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.3e-66 256.1 241 51.9
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 4.0e-66 255.4 230 58.3
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 4.4e-65 251.9 239 52.3
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 7.6e-49 198.0 230 45.7
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 7.3e-44 181.4 114 78.9
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 4.7e-43 178.7 229 39.3
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 5.2e-42 175.3 99 81.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.1e-39 167.5 127 65.4
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 7.1e-39 164.9 164 53.0
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 7.8e-38 161.4 240 40.0
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.4e-34 149.8 78 88.5
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.1e-34 149.4 174 48.3
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.6e-33 146.4 84 83.3
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.0e-30 135.2 113 61.1
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 3.1e-26 122.9 69 81.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.3e-24 117.5 90 64.4
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.8e-24 115.9 69 79.7
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.3e-23 111.3 57 86.0
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 9.3e-23 111.3 84 64.3
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.7e-19 99.4 59 76.3
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 1.8e-10 70.5 86 46.5
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 7.6e-09 65.1 99 35.4
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 1.0e-08 64.7 116 38.8
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.7e-08 63.9 116 37.1
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 4.2e-07 59.3 86 40.7
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 5.5e-07 58.9 31 90.3


User provided reference genes

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