Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 8.4e-125 450.3 215 100.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 9.7e-105 383.6 193 94.3
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.0e-98 363.6 204 86.8
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 3.0e-98 362.1 193 88.1
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 3.9e-98 361.7 193 86.0
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 3.9e-98 361.7 193 86.5
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.5e-97 359.8 193 87.0
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 3.3e-97 358.6 202 82.7
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 5.3e-95 351.3 193 81.9
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 1.2e-94 350.1 193 82.4
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 3.4e-94 348.6 193 83.9
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 5.9e-94 347.8 193 82.9
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 5.9e-94 347.8 193 82.9
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 7.7e-94 347.4 193 83.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.7e-93 346.3 193 84.5
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 2.2e-93 345.9 202 81.7
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 8.5e-93 344.0 193 81.9
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 1.9e-92 342.8 202 78.7
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 1.9e-92 342.8 193 83.9
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 1.9e-92 342.8 193 81.9
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 4.2e-92 341.7 203 79.8
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 4.2e-92 341.7 193 81.3
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.5e-92 341.3 193 81.9
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 7.2e-92 340.9 213 76.1
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 9.4e-92 340.5 207 77.3
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 1.2e-91 340.1 193 81.3
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 2.1e-91 339.3 203 79.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 2.7e-91 339.0 202 78.7
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 3.6e-91 338.6 194 82.0
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 6.1e-91 337.8 202 78.7
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 7.9e-91 337.4 195 83.1
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.0e-90 337.0 193 82.4
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 1.0e-90 337.0 193 81.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 1.4e-90 336.7 196 80.6
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 2.3e-90 335.9 203 78.8
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.3e-90 335.9 193 80.8
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 3.9e-90 335.1 193 79.8
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 6.7e-90 334.3 193 81.3
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 6.7e-90 334.3 193 79.8
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 8.8e-90 334.0 193 82.4
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 8.8e-90 334.0 193 80.8
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 1.1e-89 333.6 193 81.3
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 2.0e-89 332.8 193 82.9
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 2.0e-89 332.8 193 82.4
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 2.6e-89 332.4 202 76.7
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 4.4e-89 331.6 190 78.4
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 4.4e-89 331.6 194 80.9
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.8e-88 328.9 202 77.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 3.7e-88 328.6 202 77.2
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.7e-88 328.6 202 77.2
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.7e-88 328.6 202 77.2
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.7e-88 328.6 202 77.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.7e-88 328.6 202 77.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 3.7e-88 328.6 202 77.2
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 4.8e-88 328.2 195 80.5
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 2.4e-87 325.9 202 76.7
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 2.4e-87 325.9 193 80.8
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 5.3e-87 324.7 193 79.3
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 5.3e-87 324.7 193 80.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.0e-87 324.3 191 82.2
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 7.0e-87 324.3 195 79.5
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 9.1e-87 323.9 193 75.1
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 9.1e-87 323.9 193 77.2
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.2e-86 323.6 202 74.3
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 2.2e-85 319.3 193 75.6
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 2.2e-85 319.3 193 75.1
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 3.8e-85 318.5 222 71.6
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 6.5e-85 317.8 193 73.6
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 1.5e-84 316.6 203 77.3
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 1.5e-84 316.6 193 73.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 3.2e-84 315.5 193 75.6
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 4.2e-84 315.1 193 77.2
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 5.5e-84 314.7 195 79.0
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 7.2e-84 314.3 193 77.2
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 1.6e-83 313.2 193 72.5
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 1.6e-83 313.2 193 72.5
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 2.1e-83 312.8 193 73.1
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 6.1e-83 311.2 185 77.3
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.0e-82 310.5 193 74.6
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 1.4e-82 310.1 193 73.1
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 4.0e-82 308.5 202 73.8
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 9.7e-81 303.9 193 73.1
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.8e-80 301.6 204 69.1
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 1.1e-79 300.4 205 70.2
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.1e-79 300.4 193 72.0
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 2.4e-79 299.3 205 70.7
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 3.1e-79 298.9 205 70.7
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 7.0e-79 297.7 205 69.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 7.0e-79 297.7 193 75.1
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 1.2e-78 297.0 204 69.1
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 3.5e-78 295.4 205 69.8
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 3.5e-78 295.4 204 69.1
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 3.5e-78 295.4 204 69.1
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 5.9e-78 294.7 205 69.3
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 1.0e-77 293.9 204 68.6
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.3e-77 293.5 204 69.1
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 2.9e-77 292.4 204 68.1
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 2.9e-77 292.4 205 68.8
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 3.8e-77 292.0 203 69.5
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.5e-76 289.3 202 67.8
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 5.5e-76 288.1 204 67.6
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 9.4e-76 287.3 193 67.9
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 1.6e-75 286.6 200 68.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 4.8e-72 275.0 213 62.9
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 2.4e-63 246.1 217 57.6
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 4.3e-60 235.3 210 57.1
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 5.6e-60 235.0 209 55.0
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 5.7e-57 224.9 165 64.8
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.7e-56 223.4 175 64.0
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.8e-42 176.8 120 74.2
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.9e-32 142.9 168 49.4
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-30 137.5 72 79.2
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 7.8e-30 134.8 212 38.7
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.3e-29 134.0 230 40.4
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 2.5e-28 129.8 95 64.2
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.1e-23 114.4 209 36.8
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.2e-23 112.8 59 78.0
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.1e-23 111.7 64 76.6
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.6e-22 109.0 64 76.6
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.5e-20 104.0 73 67.1
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.4e-10 70.9 44 63.6
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 4.0e-10 69.3 45 71.1


User provided reference genes

Program Settings