Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31522 Davidia involucrata HOM05D007780 ORTHO05D000140 4.2e-77 291.2 139 100.0
Dinv31989 Davidia involucrata HOM05D007780 ORTHO05D000140 6.4e-33 144.4 82 84.1
CSS0019130 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 5.4e-32 141.4 82 80.5
Actinidia01695 Actinidia chinensis HOM05D007780 ORTHO05D000140 9.2e-32 140.6 82 80.5
Lj9A650T83 Lonicera japonica HOM05D007780 ORTHO05D000140 2.1e-31 139.4 82 80.5
Atru.chr12.1187 Acer truncatum HOM05D007780 ORTHO05D000140 2.3e-30 136.0 82 75.6
TWI34G0032 Tripterygium wilfordii HOM05D007780 ORTHO05D000140 2.3e-30 136.0 82 75.6
Ciclev10001966m.g Citrus clementina HOM05D007780 ORTHO05D000140 3.0e-30 135.6 82 75.6
QL04p022093 Quercus lobata HOM05D007780 ORTHO05D000140 3.9e-30 135.2 82 74.4
Manes.11G009500 Manihot esculenta HOM05D007780 ORTHO05D000140 5.1e-30 134.8 82 75.6
Potri.003G190900 Populus trichocarpa HOM05D007780 ORTHO05D000140 5.1e-30 134.8 82 76.8
Sabra03G0140600 Salix brachista HOM05D007780 ORTHO05D000140 5.1e-30 134.8 82 76.8
Haze_02962 Corylus avellana HOM05D007780 ORTHO05D000140 1.1e-29 133.7 82 73.2
Thecc.10G136600 Theobroma cacao HOM05D007780 ORTHO05D000140 1.1e-29 133.7 82 74.4
Cpa.g.sc33.159 Carica papaya HOM05D007780 ORTHO05D000140 1.5e-29 133.3 82 74.4
COL.COLO4_02741 Corchorus olitorius HOM05D001221 ORTHO05D009285 1.5e-29 133.3 82 74.4
Manes.04G154500 Manihot esculenta HOM05D007780 ORTHO05D000140 1.5e-29 133.3 82 76.8
CiPaw.14G011200 Carya illinoinensis HOM05D007780 ORTHO05D000140 1.9e-29 132.9 82 72.0
Gohir.A05G284100 Gossypium hirsutum HOM05D007780 ORTHO05D000140 1.9e-29 132.9 82 73.2
Gorai.009G300000 Gossypium raimondii HOM05D007780 ORTHO05D000140 1.9e-29 132.9 82 73.2
Rhsim01G0122400 Rhododendron simsii HOM05D007780 ORTHO05D000140 1.9e-29 132.9 82 75.6
CSS0047260 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 2.5e-29 132.5 77 80.5
Duzib106G1157 Durio zibethinus HOM05D007780 ORTHO05D000140 7.3e-29 131.0 82 73.2
Sed0021640 Sechium edule HOM05D007780 ORTHO05D000140 7.3e-29 131.0 82 74.4
Aa31LG5G2180 Aethionema arabicum HOM05D007780 ORTHO05D000140 1.2e-28 130.2 82 73.2
Ca_24043_v3 Cicer arietinum L. HOM05D007780 ORTHO05D000140 1.2e-28 130.2 82 70.7
Duzib128G2061 Durio zibethinus HOM05D007780 ORTHO05D000140 1.2e-28 130.2 82 74.4
Glyma.04G127400 Glycine max HOM05D007780 ORTHO05D000140 1.2e-28 130.2 82 74.4
Nitab4.5_0004997g0030 Nicotiana tabacum HOM05D007780 ORTHO05D000140 1.2e-28 130.2 82 74.4
Gohir.D05G285000 Gossypium hirsutum HOM05D007780 ORTHO05D000140 1.6e-28 129.8 82 72.0
THA.LOC104814049 Tarenaya hassleriana HOM05D007780 ORTHO05D000140 1.6e-28 129.8 82 72.0
GSVIVG01012454001 Vitis vinifera HOM05D007780 ORTHO05D000140 1.6e-28 129.8 82 70.7
Prupe.3G281200 Prunus persica HOM05D007780 ORTHO05D000140 2.1e-28 129.4 82 72.0
MELO3C019924.2 Cucumis melo HOM05D007780 ORTHO05D000140 2.8e-28 129.0 82 73.2
CiPaw.13G017800 Carya illinoinensis HOM05D007780 ORTHO05D000140 6.2e-28 127.9 82 69.5
ClCG08G008560 Citrullus lanatus HOM05D007780 ORTHO05D000140 6.2e-28 127.9 82 73.2
CsaV3_6G004550 Cucumis sativus L. HOM05D007780 ORTHO05D000140 6.2e-28 127.9 82 72.0
CANSAT56G1284 Cannabis sativa HOM05D007780 ORTHO05D000140 1.1e-27 127.1 81 69.1
Thhalv10028829m.g Eutrema salsugineum HOM05D007780 ORTHO05D000140 1.1e-27 127.1 82 73.2
Glyma.06G311800 Glycine max HOM05D007780 ORTHO05D000140 1.1e-27 127.1 82 73.2
Solyc01g097250.4 Solanum lycopersicum HOM05D007780 ORTHO05D000140 1.1e-27 127.1 81 72.8
Sopen01g040920 Solanum pennellii HOM05D007780 ORTHO05D000140 1.1e-27 127.1 81 72.8
PGSC0003DMG400019436 Solanum tuberosum HOM05D007780 ORTHO05D000140 1.1e-27 127.1 81 72.8
arahy.Tifrunner.gnm1.ann1.EN22MD Arachis hypogaea HOM05D007780 ORTHO05D000140 1.8e-27 126.3 82 69.5
Gorai.011G222700 Gossypium raimondii HOM05D007780 ORTHO05D000140 1.8e-27 126.3 83 71.1
Sp6g02460 Schrenkiella parvula HOM05D007780 ORTHO05D000140 2.3e-27 125.9 82 73.2
vmacro20851 Vaccinium macrocarpon HOM05D007780 ORTHO05D000140 2.3e-27 125.9 81 74.1
arahy.Tifrunner.gnm1.ann1.23G0UH Arachis hypogaea HOM05D007780 ORTHO05D000140 3.1e-27 125.6 82 68.3
Gohir.A10G191100 Gossypium hirsutum HOM05D007780 ORTHO05D000140 4.0e-27 125.2 83 71.1
Gohir.D10G198800 Gossypium hirsutum HOM05D007780 ORTHO05D000140 4.0e-27 125.2 83 71.1
TPR.G16371 Trifolium pratense HOM05D007780 ORTHO05D000140 4.0e-27 125.2 82 69.5
Medtr8g041580 Medicago truncatula HOM05D007780 ORTHO05D000140 5.2e-27 124.8 82 68.3
Lj3g0012757 Lotus japonicus HOM05D007780 ORTHO05D000140 6.8e-27 124.4 82 69.5
LjContig00430g0006539 Lotus japonicus HOM05D007780 ORTHO05D000140 6.8e-27 124.4 82 67.1
A02p24850 Brassica napus HOM05D007780 ORTHO05D000140 1.2e-26 123.6 82 70.7
BraA02t07471Z Brassica rapa HOM05D007780 ORTHO05D000140 1.2e-26 123.6 82 70.7
Carub.0006s3459 Capsella rubella HOM05D007780 ORTHO05D000140 1.2e-26 123.6 82 69.5
BcaB05g23640 Brassica carinata HOM05D007780 ORTHO05D000140 1.5e-26 123.2 73 76.7
BcaC03g16144 Brassica carinata HOM05D007780 ORTHO05D000140 2.6e-26 122.5 82 72.0
C02p39310 Brassica napus HOM05D007780 ORTHO05D000140 2.6e-26 122.5 82 72.0
BolC2t09942H Brassica oleracea HOM05D007780 ORTHO05D000140 2.6e-26 122.5 82 72.0
CAN.G134.88 Capsicum annuum HOM05D007780 ORTHO05D000140 2.6e-26 122.5 82 68.3
Eucgr.G03193 Eucalyptus grandis HOM05D007780 ORTHO05D000140 3.4e-26 122.1 70 80.0
Duzib114G0835 Durio zibethinus HOM05D007780 ORTHO05D000140 5.8e-26 121.3 70 77.1
Nitab4.5_0018960g0020 Nicotiana tabacum HOM05D007780 ORTHO05D000140 9.9e-26 120.6 70 81.4
AL6G50500 Arabidopsis lyrata HOM05D007780 ORTHO05D000140 3.7e-25 118.6 82 65.9
AT4G02550 Arabidopsis thaliana HOM05D007780 ORTHO05D000140 4.9e-25 118.2 82 64.6
MD02G1272200 Malus domestica HOM05D007780 ORTHO05D000140 1.4e-24 116.7 86 66.3
CARHR250840 Cardamine hirsuta HOM05D007780 ORTHO05D000140 4.1e-24 115.2 82 67.1
Sed0017949 Sechium edule HOM05D007780 ORTHO05D000140 7.6e-18 94.4 59 74.6
Peaxi162Scf00282g00513 Petunia axillaris HOM05D007780 ORTHO05D000140 1.3e-17 93.6 57 77.2
MD07G1041200 Malus domestica HOM05D007780 ORTHO05D000140 6.4e-17 91.3 57 73.7
CSS0032239 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 3.0e-14 82.4 69 55.1
CSS0005722 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000140 1.1e-13 80.5 82 46.3
CSS0001126 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000140 2.5e-13 79.3 69 53.6
CSS0020500 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 2.5e-13 79.3 69 53.6
vmacro07033 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 2.8e-12 75.9 67 55.2
vmacro12400 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 3.6e-12 75.5 67 55.2
CSS0044988 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 5.3e-11 71.6 57 59.6
Nn2g14680 Nelumbo nucifera HOM05D000665 ORTHO05D000140 9.0e-11 70.9 82 42.7
Rhsim13G0204800 Rhododendron simsii HOM05D000665 ORTHO05D000140 1.7e-09 66.6 67 47.8
CSS0048344 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 2.9e-09 65.9 57 54.4
TAR526G0001 Trochodendron aralioides HOM05D000665 ORTHO05D000140 1.1e-08 63.9 82 41.5
CSS0014388 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 1.9e-08 63.2 57 52.6
CSS0027470 Camellia sinensis var. sinensis HOM05D007780 ORTHO05D000140 1.9e-08 63.2 57 52.6
TAR365G0051 Trochodendron aralioides HOM05D007780 ORTHO05D000140 1.9e-08 63.2 65 43.1
Lj6g0024114 Lotus japonicus HOM05D000665 ORTHO05D000140 5.4e-08 61.6 67 41.8
Glyma.07G234900 Glycine max HOM05D000665 ORTHO05D000140 7.1e-08 61.2 70 45.7
Phvul.006G016600 Phaseolus vulgaris HOM05D000665 ORTHO05D000140 7.1e-08 61.2 69 40.6
Dinv29316 Davidia involucrata HOM05D000001 ORTHO05D000003 2.7e-07 59.3 69 39.1
QL01p016350 Quercus lobata HOM05D000665 ORTHO05D000140 3.5e-07 58.9 69 42.0
COL.COLO4_06628 Corchorus olitorius HOM05D000665 ORTHO05D000140 4.6e-07 58.5 69 42.0
TPR.G13048 Trifolium pratense HOM05D007780 ORTHO05D000140 6.0e-07 58.2 81 37.0
Duzib168G0826 Durio zibethinus HOM05D000665 ORTHO05D000140 1.0e-06 57.4 69 40.6
Medtr3g045460 Medicago truncatula HOM05D000665 ORTHO05D000140 1.0e-06 57.4 74 39.2
QL01p016365 Quercus lobata HOM05D000665 ORTHO05D000140 1.0e-06 57.4 69 42.0
Psat2g130400 Pisum sativum HOM05D000665 ORTHO05D000140 1.7e-06 56.6 74 39.2
TAR524G0001 Trochodendron aralioides HOM05D000071 ORTHO05D000140 1.7e-06 56.6 70 40.0
TPR.G11842 Trifolium pratense HOM05D000001 ORTHO05D000003 3.0e-06 55.8 67 40.3
Haze_23288 Corylus avellana HOM05D000665 ORTHO05D000140 5.1e-06 55.1 67 38.8
Haze_23291 Corylus avellana HOM05D000665 ORTHO05D000140 5.1e-06 55.1 67 38.8
Thecc.09G253400 Theobroma cacao HOM05D000665 ORTHO05D000140 5.1e-06 55.1 82 37.8
VMungo0540G2239 Vigna mungo HOM05D000665 ORTHO05D000140 5.1e-06 55.1 69 36.2
Gohir.D05G075500 Gossypium hirsutum HOM05D000665 ORTHO05D000140 6.6e-06 54.7 69 37.7
Ca_02662_v3 Cicer arietinum L. HOM05D000665 ORTHO05D000140 8.7e-06 54.3 74 37.8


User provided reference genes

Program Settings