Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31493 Davidia involucrata HOM05D002265 ORTHO05D002400 9.0e-263 909.8 501 100.0
Dinv32049 Davidia involucrata HOM05D002265 ORTHO05D002400 7.5e-116 421.8 841 39.0
Rhsim07G0062800 Rhododendron simsii HOM05D002265 ORTHO05D002400 1.2e-81 308.1 647 39.6
CiPaw.14G006100 Carya illinoinensis HOM05D002265 ORTHO05D002400 2.4e-69 267.3 230 68.7
Potri.003G201400 Populus trichocarpa HOM05D002265 ORTHO05D002400 5.2e-69 266.2 233 68.7
Duzib106G0709 Durio zibethinus HOM05D002265 ORTHO05D002400 3.4e-68 263.5 232 69.0
Actinidia06269 Actinidia chinensis HOM05D002265 ORTHO05D002400 2.2e-67 260.8 590 39.0
QL04p013744 Quercus lobata HOM05D002265 ORTHO05D002400 3.2e-66 256.9 233 66.1
Prupe.2G029500 Prunus persica HOM05D002265 ORTHO05D002400 1.6e-65 254.6 409 46.5
Duzib114G1046 Durio zibethinus HOM05D002265 ORTHO05D002400 3.5e-65 253.4 233 66.1
Sabra01G0018100 Salix brachista HOM05D002265 ORTHO05D002400 4.6e-65 253.1 235 65.5
Haze_03088 Corylus avellana HOM05D002265 ORTHO05D002400 1.3e-64 251.5 234 66.7
TWI38G2368 Tripterygium wilfordii HOM05D002265 ORTHO05D002400 3.9e-64 250.0 235 66.0
Thecc.10G006100 Theobroma cacao HOM05D002265 ORTHO05D002400 9.6e-63 245.4 233 64.8
MD07G1032000 Malus domestica HOM05D002265 ORTHO05D002400 2.0e-60 237.7 237 65.4
Eucgr.G03256 Eucalyptus grandis HOM05D002265 ORTHO05D002400 2.2e-59 234.2 232 59.5
Sabra03G0148900 Salix brachista HOM05D002265 ORTHO05D002400 4.9e-59 233.0 233 60.5
Cfa010863 Carpinus fangiana HOM05D002265 ORTHO05D002400 1.2e-57 228.4 582 35.1
CiPaw.13G010900 Carya illinoinensis HOM05D002265 ORTHO05D002400 3.5e-57 226.9 233 62.7
Cc02_g29130 Coffea canephora HOM05D002265 ORTHO05D002400 2.5e-55 220.7 237 58.6
MD02G1294400 Malus domestica HOM05D002265 ORTHO05D002400 4.3e-55 219.9 235 62.6
Manes.04G164600 Manihot esculenta HOM05D002265 ORTHO05D002400 9.6e-55 218.8 232 57.8
FAN18G3506 Fragaria x ananassa HOM05D002265 ORTHO05D002400 1.6e-54 218.0 243 61.7
RcHm_v2.0_Chr1g0319711 Rosa chinensis HOM05D002265 ORTHO05D002400 1.6e-54 218.0 244 62.7
TWI63G0471 Tripterygium wilfordii HOM05D002265 ORTHO05D002400 2.8e-54 217.2 234 58.5
Glyma.04G139400 Glycine max HOM05D002265 ORTHO05D002400 1.4e-53 214.9 235 59.1
FvH4_5g29010 Fragaria vesca HOM05D002265 ORTHO05D002400 5.3e-53 213.0 244 61.5
VMungo1080G1856 Vigna mungo HOM05D002265 ORTHO05D002400 2.6e-52 210.7 238 57.6
COL.COLO4_25831 Corchorus olitorius HOM05D002265 ORTHO05D002400 9.9e-52 208.8 238 58.4
FAN08G0300 Fragaria x ananassa HOM05D002265 ORTHO05D002400 1.2e-49 201.8 244 59.4
Manes.11G002800 Manihot esculenta HOM05D002265 ORTHO05D002400 5.1e-48 196.4 233 54.1
FAN13G1675 Fragaria x ananassa HOM05D002265 ORTHO05D002400 8.7e-48 195.7 245 58.8
Gohir.D04G071300 Gossypium hirsutum HOM05D002265 ORTHO05D002400 2.5e-47 194.1 234 57.7
Gorai.012G080300 Gossypium raimondii HOM05D002265 ORTHO05D002400 5.6e-47 193.0 235 57.9
Glyma.12G039600 Glycine max HOM05D002265 ORTHO05D002400 7.4e-47 192.6 233 55.4
Phvul.005G031900 Phaseolus vulgaris HOM05D002265 ORTHO05D002400 3.7e-46 190.3 242 53.7
Gohir.A05G333200 Gossypium hirsutum HOM05D002265 ORTHO05D002400 4.8e-46 189.9 231 57.6
Ciclev10030645m.g Citrus clementina HOM05D002265 ORTHO05D002400 8.1e-46 189.1 237 55.7
MSTRG.5058 Avicennia marina HOM05D002265 ORTHO05D002400 2.4e-45 187.6 235 55.3
Lj1C1244T8 Lonicera japonica HOM05D002265 ORTHO05D002400 9.0e-45 185.7 293 47.8
Lj9C646T7 Lonicera japonica HOM05D002265 ORTHO05D002400 1.2e-44 185.3 288 47.9
DCAR_003238 Daucus carota HOM05D002265 ORTHO05D002400 2.0e-44 184.5 237 57.0
TAR369G0190 Trochodendron aralioides HOM05D002265 ORTHO05D002400 5.8e-44 183.0 235 53.2
ClCG01G007650 Citrullus lanatus HOM05D002265 ORTHO05D002400 7.6e-44 182.6 240 53.8
Sed0025404 Sechium edule HOM05D002265 ORTHO05D002400 1.7e-43 181.4 230 53.5
Glyma.11G113700 Glycine max HOM05D002265 ORTHO05D002400 1.9e-42 177.9 233 52.8
Potri.001G024100 Populus trichocarpa HOM05D002265 ORTHO05D002400 5.5e-42 176.4 192 59.4
Lj3g0022374 Lotus japonicus HOM05D002265 ORTHO05D002400 2.7e-41 174.1 249 52.2
Glyma.11G151100 Glycine max HOM05D002265 ORTHO05D002400 3.5e-41 173.7 234 53.8
CAN.G1571.3 Capsicum annuum HOM05D002265 ORTHO05D002400 4.6e-41 173.3 238 54.2
PGR031G1456 Punica granatum HOM05D002265 ORTHO05D002400 6.0e-41 172.9 247 51.0
DCAR_022353 Daucus carota HOM05D002265 ORTHO05D002400 1.3e-40 171.8 230 54.8
Aqoxy2G00301 Aquilegia oxysepala HOM05D002265 ORTHO05D002400 1.8e-40 171.4 239 49.4
Sed0027247 Sechium edule HOM05D002265 ORTHO05D002400 1.1e-39 168.7 230 53.0
Nitab4.5_0013777g0010 Nicotiana tabacum HOM05D002265 ORTHO05D002400 5.7e-39 166.4 238 51.7
Nitab4.5_0000316g0130 Nicotiana tabacum HOM05D002265 ORTHO05D002400 7.4e-39 166.0 239 52.3
Oeu027111.1 Olea europaea HOM05D002265 ORTHO05D002400 1.3e-38 165.2 234 50.9
Oeu027115.1 Olea europaea HOM05D002265 ORTHO05D002400 1.8e-37 161.4 232 49.6
Peaxi162Scf00309g00036 Petunia axillaris HOM05D002265 ORTHO05D002400 1.8e-37 161.4 240 53.8
arahy.Tifrunner.gnm1.ann1.CMX2VV Arachis hypogaea HOM05D002265 ORTHO05D002400 1.2e-36 158.7 249 49.4
CANSAT35G0108 Cannabis sativa HOM05D002265 ORTHO05D002400 7.6e-36 156.0 251 51.0
Medtr3g020820 Medicago truncatula HOM05D002265 ORTHO05D002400 2.2e-35 154.5 233 50.6
Phvul.011G041700 Phaseolus vulgaris HOM05D002265 ORTHO05D002400 2.2e-35 154.5 230 49.1
Cpa.g.sc197.5 Carica papaya HOM05D002265 ORTHO05D002400 2.9e-35 154.1 229 49.3
Actinidia21526 Actinidia chinensis HOM05D002265 ORTHO05D002400 9.3e-34 149.1 620 29.8
Actinidia19444 Actinidia chinensis HOM05D002265 ORTHO05D002400 2.7e-33 147.5 618 30.7
Psat7g183000 Pisum sativum HOM05D002265 ORTHO05D002400 6.1e-33 146.4 233 46.8
CsaV3_5G024700 Cucumis sativus L. HOM05D002265 ORTHO05D002400 1.9e-31 141.4 242 46.7
Atru.chr11.2465 Acer truncatum HOM05D002265 ORTHO05D002400 9.7e-31 139.0 254 44.5
VMungo1127G0897 Vigna mungo HOM05D002265 ORTHO05D002400 2.8e-30 137.5 208 47.1
ECA248G3395 Erigeron canadensis HOM05D000006 ORTHO05D000091 8.2e-30 136.0 229 45.9
Gohir.A10G241200 Gossypium hirsutum HOM05D002265 ORTHO05D002400 1.8e-29 134.8 239 46.9
Solyc01g068460.4 Solanum lycopersicum HOM05D002265 ORTHO05D002400 2.4e-29 134.4 244 46.3
PSO384G0056 Papaver somniferum HOM05D002265 ORTHO05D002400 5.3e-29 133.3 249 45.0
Gorai.011G293700 Gossypium raimondii HOM05D002265 ORTHO05D002400 1.2e-28 132.1 232 48.3
PSO339G4166 Papaver somniferum HOM05D002265 ORTHO05D002400 1.2e-28 132.1 250 45.2
Atru.chr11.2494 Acer truncatum HOM05D002265 ORTHO05D002400 1.5e-28 131.7 249 45.4
HanXRQChr13g0394021 Helianthus annuus HOM05D002265 ORTHO05D002400 2.2e-27 127.9 244 44.3
Ca_20911_v3 Cicer arietinum L. HOM05D002265 ORTHO05D002400 2.9e-27 127.5 235 44.3
AUR62031130 Chenopodium quinoa HOM05D002265 ORTHO05D002400 6.5e-27 126.3 238 44.5
AUR62031133 Chenopodium quinoa HOM05D002265 ORTHO05D002400 6.5e-27 126.3 238 44.5
arahy.Tifrunner.gnm1.ann1.Z3R2Q1 Arachis hypogaea HOM05D002265 ORTHO05D002400 8.5e-27 125.9 245 43.7
TPR.G3834 Trifolium pratense HOM05D002265 ORTHO05D002400 8.5e-27 125.9 229 43.7
Lalb_Chr25g0282331 Lupinus albus HOM05D002265 ORTHO05D002400 7.2e-26 122.9 239 43.9
Ca_14307_v3 Cicer arietinum L. HOM05D002265 ORTHO05D002400 1.6e-25 121.7 236 43.6
MELO3C005131.2 Cucumis melo HOM05D002265 ORTHO05D002400 4.6e-25 120.2 242 43.4
Lj3g0006860 Lotus japonicus HOM05D002265 ORTHO05D002400 6.1e-25 119.8 186 49.5
Ah.12g065090 Amaranthus hybridus HOM05D002265 ORTHO05D002400 1.0e-24 119.0 239 46.0
EL10Ac8g20477 Beta vulgaris HOM05D002265 ORTHO05D002400 1.4e-24 118.6 391 34.8
AUR62036537 Chenopodium quinoa HOM05D002265 ORTHO05D002400 1.4e-24 118.6 412 34.5
Psat5g216960 Pisum sativum HOM05D002265 ORTHO05D002400 1.4e-24 118.6 451 31.9
Lsat_1_v5_gn_1_97840 Lactuca sativa HOM05D002265 ORTHO05D002400 2.5e-23 114.4 229 44.1
MD07G1032600 Malus domestica HOM05D002265 ORTHO05D002400 5.7e-23 113.2 102 62.7
Medtr4g071030 Medicago truncatula HOM05D002265 ORTHO05D002400 2.2e-22 111.3 233 41.6
THA.LOC104803167 Tarenaya hassleriana HOM05D002265 ORTHO05D002400 6.3e-22 109.8 232 41.8
EL10Ac2g02851 Beta vulgaris HOM05D002265 ORTHO05D002400 2.4e-21 107.8 230 42.2
Sopen01g030420 Solanum pennellii HOM05D002265 ORTHO05D002400 3.1e-21 107.5 190 46.8
Gohir.D10G253400 Gossypium hirsutum HOM05D002265 ORTHO05D002400 5.3e-21 106.7 229 43.2
MD00G1188700 Malus domestica HOM05D002265 ORTHO05D002400 6.9e-21 106.3 77 68.8
Sc10g0004270 Simmondsia chinensis HOM05D002265 ORTHO05D002400 1.4e-18 98.6 238 39.5
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 9.4e-18 95.9 257 37.7
TAR053G0005 Trochodendron aralioides HOM05D002265 ORTHO05D002400 9.4e-18 95.9 129 48.8
Hund13331 Selenicereus undatus HOM05D002265 ORTHO05D002400 1.2e-17 95.5 236 39.4
Nn2g14949 Nelumbo nucifera HOM05D002265 ORTHO05D002400 1.0e-16 92.4 123 56.1
AUR62026829 Chenopodium quinoa HOM05D002265 ORTHO05D002400 1.4e-16 92.0 228 39.9
Peaxi162Scf00047g00214 Petunia axillaris HOM05D002265 ORTHO05D002400 3.0e-16 90.9 131 54.2
ATR0217G005 Amborella trichopoda HOM05D002265 ORTHO05D002400 1.7e-14 85.1 233 36.5
GSVIVG01033565001 Vitis vinifera HOM05D002265 ORTHO05D000863 2.8e-14 84.3 231 37.2
AUR62037225 Chenopodium quinoa HOM05D002265 ORTHO05D002400 8.2e-14 82.8 519 27.9
Manes.08G055800 Manihot esculenta HOM05D002265 ORTHO05D002400 4.1e-13 80.5 187 37.4
QL07p004364 Quercus lobata HOM05D002265 ORTHO05D002400 2.0e-12 78.2 284 32.0
Potri.016G041100 Populus trichocarpa HOM05D002265 ORTHO05D002400 2.6e-12 77.8 190 36.3
Sabra16G0043900 Salix brachista HOM05D002265 ORTHO05D002400 4.5e-12 77.0 193 35.8
Potri.006G043900 Populus trichocarpa HOM05D002265 ORTHO05D002400 1.0e-11 75.9 190 35.3
Thecc.05G143100 Theobroma cacao HOM05D002265 ORTHO05D002400 1.0e-11 75.9 190 35.3
Duzib128G0504 Durio zibethinus HOM05D002265 ORTHO05D002400 2.9e-11 74.3 189 35.4
COL.COLO4_34259 Corchorus olitorius HOM05D002265 ORTHO05D002400 5.0e-11 73.6 196 36.2
CSS0016894 Camellia sinensis var. sinensis HOM05D002265 ORTHO05D002400 1.1e-10 72.4 199 35.2
Sabra16G0047300 Salix brachista HOM05D002265 ORTHO05D002400 1.5e-10 72.0 214 33.2
Sabra06G0030100 Salix brachista HOM05D002265 ORTHO05D002400 1.9e-10 71.6 214 32.7
Dinv23654 Davidia involucrata HOM05D002265 ORTHO05D002400 3.2e-10 70.9 89 49.4
ATR0721G046 Amborella trichopoda HOM05D002265 ORTHO05D002400 5.5e-10 70.1 135 37.0
CiPaw.09G043600 Carya illinoinensis HOM05D002265 ORTHO05D002400 5.5e-10 70.1 297 32.3
Dinv18477 Davidia involucrata HOM05D002265 ORTHO05D002400 2.1e-09 68.2 201 36.3
Actinidia39181 Actinidia chinensis HOM05D002265 ORTHO05D002400 3.6e-09 67.4 99 45.5
MBI13_g05161_MAGBIO Magnolia biondii HOM05D002265 ORTHO05D002400 3.6e-09 67.4 70 52.9
Ah.10g030820 Amaranthus hybridus HOM05D002265 ORTHO05D002400 6.1e-09 66.6 194 37.1
Lj1g0002630 Lotus japonicus HOM05D002265 ORTHO05D002400 1.0e-08 65.9 208 33.7
Sp4g21190 Schrenkiella parvula HOM05D002265 ORTHO05D002400 1.4e-08 65.5 152 38.8
Gohir.D09G115700 Gossypium hirsutum HOM05D002265 ORTHO05D002400 4.0e-08 63.9 178 34.3
Glyma.19G133000 Glycine max HOM05D002265 ORTHO05D002400 6.7e-08 63.2 241 31.1
Gorai.006G134000 Gossypium raimondii HOM05D002265 ORTHO05D002400 6.7e-08 63.2 178 34.3
Ciclev10004157m.g Citrus clementina HOM05D002265 ORTHO05D002400 8.8e-08 62.8 217 33.2
Migut.N01816 Erythranthe guttata HOM05D002265 ORTHO05D002400 8.8e-08 62.8 67 53.7
Hund19117 Selenicereus undatus HOM05D002265 ORTHO05D002400 1.5e-07 62.0 266 25.9
C03p25620 Brassica napus HOM05D002265 ORTHO05D002400 2.0e-07 61.6 163 34.4
BolC3t14950H Brassica oleracea HOM05D002265 ORTHO05D002400 2.0e-07 61.6 163 34.4
CDE08G0554 Ceratophyllum demersum HOM05D002265 ORTHO05D002400 2.0e-07 61.6 205 30.7
Actinidia02253 Actinidia chinensis HOM05D002265 ORTHO05D002400 3.3e-07 60.8 249 29.7
AUR62030383 Chenopodium quinoa HOM05D002265 ORTHO05D002400 4.4e-07 60.5 89 42.7
PGR142G1568 Punica granatum HOM05D002265 ORTHO05D002400 4.4e-07 60.5 190 33.7
Ca_08415_v3 Cicer arietinum L. HOM05D002265 ORTHO05D002400 7.4e-07 59.7 223 31.4
Actinidia09285 Actinidia chinensis HOM05D002265 ORTHO05D030910 9.7e-07 59.3 298 28.5
Thhalv10016455m.g Eutrema salsugineum HOM05D002265 ORTHO05D002400 9.7e-07 59.3 233 32.2
Lalb_Chr03g0025461 Lupinus albus HOM05D002265 ORTHO05D002400 9.7e-07 59.3 66 48.5
MBI13_g05160_MAGBIO Magnolia biondii HOM05D002265 ORTHO05D002400 9.7e-07 59.3 113 42.5
Gohir.A09G119500 Gossypium hirsutum HOM05D002265 ORTHO05D002400 1.3e-06 58.9 277 29.2
CiPaw.10G037400 Carya illinoinensis HOM05D002265 ORTHO05D002400 2.2e-06 58.2 143 37.8
Nitab4.5_0007184g0030 Nicotiana tabacum HOM05D002265 ORTHO05D002400 2.2e-06 58.2 60 65.0
MSTRG.19828 Avicennia marina HOM05D002265 ORTHO05D002400 6.3e-06 56.6 197 33.0
Oeu033032.2 Olea europaea HOM05D002265 ORTHO05D002400 8.2e-06 56.2 200 31.0


User provided reference genes

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