Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31353 Davidia involucrata HOM05D003020 ORTHO05D003226 1.0e-135 486.9 267 100.0
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 5.9e-51 205.3 263 52.5
Dinv11798 Davidia involucrata HOM05D003020 ORTHO05D003226 3.4e-43 179.5 268 47.0
Actinidia02961 Actinidia chinensis HOM05D003020 ORTHO05D003226 7.2e-41 171.8 269 43.9
Actinidia02960 Actinidia chinensis HOM05D003020 ORTHO05D003226 6.1e-40 168.7 263 45.2
Actinidia07720 Actinidia chinensis HOM05D000283 ORTHO05D003226 9.7e-30 134.8 269 41.3
Hma1.2p1_0453F.1_g156030 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 2.2e-29 133.7 270 39.3
Sabra08G0029900 Salix brachista HOM05D003020 ORTHO05D003226 8.2e-29 131.7 273 37.7
Potri.008G043300 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.4e-28 131.0 277 37.9
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 5.3e-28 129.0 262 38.5
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 5.3e-28 129.0 284 39.4
Actinidia02963 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.9e-26 123.2 229 37.6
CiPaw.02G176000 Carya illinoinensis HOM05D003020 ORTHO05D003226 3.8e-26 122.9 284 38.4
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.1e-25 121.3 285 37.2
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.9e-25 120.6 289 37.4
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.5e-25 119.0 285 37.2
Sabra16G0321600 Salix brachista HOM05D003020 ORTHO05D003226 1.6e-24 117.5 263 38.8
Sabra16G0323200 Salix brachista HOM05D003020 ORTHO05D003226 1.6e-24 117.5 263 38.8
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.6e-24 117.5 267 36.3
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.7e-24 116.7 279 36.9
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 6.1e-24 115.5 274 37.6
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 8.0e-24 115.2 285 36.8
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.4e-23 114.4 266 37.2
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.0e-23 113.2 274 36.5
Sabra10G0168900 Salix brachista HOM05D003020 ORTHO05D003226 1.1e-22 111.3 269 35.3
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 2.6e-22 110.2 305 34.4
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 4.4e-22 109.4 277 37.5
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 5.7e-22 109.0 279 35.5
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 7.5e-22 108.6 277 35.7
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 2.2e-21 107.1 272 35.7
Migut.F01988 Erythranthe guttata HOM05D003020 ORTHO05D003226 1.6e-19 100.9 276 33.3
FvH4_7g20060 Fragaria vesca HOM05D003020 ORTHO05D003226 7.7e-19 98.6 291 35.7
Cpa.g.sc53.28 Carica papaya HOM05D003020 ORTHO05D003226 1.0e-18 98.2 254 35.8
FAN06G2932 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.0e-18 98.2 291 35.7
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 1.7e-18 97.4 283 35.3
Cc02_g11380 Coffea canephora HOM05D003020 ORTHO05D003226 2.2e-18 97.1 295 34.2
CiPaw.01G275700 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.9e-18 96.7 265 35.5
Eucgr.J01114 Eucalyptus grandis HOM05D003020 ORTHO05D003226 2.9e-18 96.7 271 34.7
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.9e-18 96.7 278 34.9
Actinidia02959 Actinidia chinensis HOM05D003020 ORTHO05D003226 3.8e-18 96.3 140 46.4
SalBow4G1965 Salvia bowleyana HOM05D003020 ORTHO05D003226 3.8e-18 96.3 286 34.3
Lj1C921T4 Lonicera japonica HOM05D003020 ORTHO05D003226 1.5e-17 94.4 199 38.2
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.2e-17 93.2 262 32.8
Rhsim09G0153900 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.6e-16 90.9 271 34.3
Oeu063752.1 Olea europaea HOM05D003020 ORTHO05D003226 4.7e-16 89.4 272 34.6
Rhsim09G0153800 Rhododendron simsii HOM05D003020 ORTHO05D003226 4.7e-16 89.4 263 36.1
Duzib106G1942 Durio zibethinus HOM05D003020 ORTHO05D003226 6.1e-16 89.0 288 32.3
Nitab4.5_0000534g0060 Nicotiana tabacum HOM05D003020 ORTHO05D003226 3.0e-15 86.7 289 32.5
FAN01G0050 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.0e-15 86.3 294 35.0
FAN01G2565 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.0e-15 86.3 294 35.0
Manes.07G102900 Manihot esculenta HOM05D003020 ORTHO05D003226 5.2e-15 85.9 282 31.6
Rhsim09G0153700 Rhododendron simsii HOM05D003020 ORTHO05D003226 6.8e-15 85.5 271 34.3
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 8.8e-15 85.1 277 33.2
Dinv11799 Davidia involucrata HOM05D003020 ORTHO05D003226 8.8e-15 85.1 136 43.4
PGR044G1573 Punica granatum HOM05D003020 ORTHO05D003226 1.5e-14 84.3 281 32.4
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.5e-14 84.3 247 35.2
PGR044G1634 Punica granatum HOM05D003020 ORTHO05D003226 2.0e-14 84.0 289 31.8
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 5.7e-14 82.4 277 33.2
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 7.5e-14 82.0 275 34.5
Gohir.A06G178400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.3e-13 81.3 282 31.2
Manes.10G043600 Manihot esculenta HOM05D003020 ORTHO05D003226 1.3e-13 81.3 228 36.0
Lsat_1_v5_gn_2_114020 Lactuca sativa HOM05D003020 ORTHO05D003226 1.7e-13 80.9 204 37.7
Sed0002867 Sechium edule HOM05D003020 ORTHO05D003226 1.7e-13 80.9 261 30.3
ClCG09G020480 Citrullus lanatus HOM05D003020 ORTHO05D003226 2.8e-13 80.1 294 30.3
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 3.7e-13 79.7 276 32.6
VMungo0720G0200 Vigna mungo HOM05D003020 ORTHO05D003226 3.7e-13 79.7 272 29.4
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 4.8e-13 79.3 215 34.9
Eucgr.J01120 Eucalyptus grandis HOM05D003020 ORTHO05D003226 6.3e-13 79.0 279 33.3
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 8.3e-13 78.6 279 31.9
TWI38G1817 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 8.3e-13 78.6 253 29.6
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 1.1e-12 78.2 238 32.8
Lalb_Chr03g0036011 Lupinus albus HOM05D003020 ORTHO05D003226 1.4e-12 77.8 257 30.0
Gorai.010G204300 Gossypium raimondii HOM05D003020 ORTHO05D003226 4.1e-12 76.3 282 29.8
Glyma.10G213000 Glycine max HOM05D003020 ORTHO05D003226 5.4e-12 75.9 266 29.7
Gohir.D06G174600 Gossypium hirsutum HOM05D003020 ORTHO05D003226 5.4e-12 75.9 282 29.8
ECA238G4329 Erigeron canadensis HOM05D003020 ORTHO05D003226 7.0e-12 75.5 264 30.7
COL.COLO4_23725 Corchorus olitorius HOM05D003020 ORTHO05D003226 1.2e-11 74.7 180 33.3
DCAR_015284 Daucus carota HOM05D003020 ORTHO05D003226 1.2e-11 74.7 275 26.9
Lj1C921T2 Lonicera japonica HOM05D003020 ORTHO05D003226 1.6e-11 74.3 225 33.8
Lj5g0002057 Lotus japonicus HOM05D003020 ORTHO05D003226 1.6e-11 74.3 263 32.3
Rhsim09G0153500 Rhododendron simsii HOM05D003020 ORTHO05D003226 2.0e-11 73.9 275 34.9
Thecc.10G069300 Theobroma cacao HOM05D003020 ORTHO05D003226 2.0e-11 73.9 301 29.9
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 2.7e-11 73.6 284 32.4
FAN10G4329 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.7e-11 73.6 229 34.9
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 5.9e-11 72.4 272 31.2
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 5.9e-11 72.4 222 33.3
Oeu041159.1 Olea europaea HOM05D003020 ORTHO05D003226 5.9e-11 72.4 96 44.8
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 7.7e-11 72.0 272 32.0
DCAR_019134 Daucus carota HOM05D003020 ORTHO05D003226 7.7e-11 72.0 270 28.9
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 1.0e-10 71.6 275 29.1
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 1.7e-10 70.9 218 33.5
Lalb_Chr19g0129551 Lupinus albus HOM05D003020 ORTHO05D003226 2.2e-10 70.5 263 29.3
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.9e-10 70.1 279 27.6
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 3.8e-10 69.7 271 31.0
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 3.8e-10 69.7 271 31.0
Lj1C921T3 Lonicera japonica HOM05D003020 ORTHO05D003226 3.8e-10 69.7 219 32.9
Rhsim09G0153600 Rhododendron simsii HOM05D003020 ORTHO05D003226 3.8e-10 69.7 262 31.7
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.0e-10 69.3 279 27.6
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 5.0e-10 69.3 210 35.2
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 5.0e-10 69.3 268 29.9
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 6.5e-10 68.9 275 30.2
Medtr1g095730 Medicago truncatula HOM05D003020 ORTHO05D003226 6.5e-10 68.9 276 29.3
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 8.5e-10 68.6 268 32.1
Migut.F01762 Erythranthe guttata HOM05D003020 ORTHO05D003226 1.1e-09 68.2 283 29.3
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 1.1e-09 68.2 277 27.4
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.1e-09 68.2 277 27.4
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 1.1e-09 68.2 275 28.4
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.5e-09 67.8 212 32.1
Lsat_1_v5_gn_8_19121 Lactuca sativa HOM05D003020 ORTHO05D003226 1.5e-09 67.8 280 30.4
CsaV3_5G025940 Cucumis sativus L. HOM05D003020 ORTHO05D003226 1.9e-09 67.4 277 32.1
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 1.9e-09 67.4 278 34.5
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.5e-09 67.0 278 27.3
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 3.2e-09 66.6 281 27.8
Phvul.007G092400 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 4.2e-09 66.2 271 28.0
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 5.5e-09 65.9 261 27.2
Ca_10586_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.5e-09 65.9 264 29.9
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 7.2e-09 65.5 270 29.3
MELO3C025508.2 Cucumis melo HOM05D003020 ORTHO05D003226 9.4e-09 65.1 274 32.5
Duzib114G0319 Durio zibethinus HOM05D003020 ORTHO05D003226 1.2e-08 64.7 275 29.8
HanXRQChr08g0219501 Helianthus annuus HOM05D003020 ORTHO05D003226 1.2e-08 64.7 263 31.2
TPR.G1799 Trifolium pratense HOM05D003020 ORTHO05D003226 1.2e-08 64.7 239 30.5
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 1.2e-08 64.7 269 29.7
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 2.1e-08 63.9 268 26.9
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 2.1e-08 63.9 224 29.9
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 2.1e-08 63.9 267 30.0
Eucgr.J01119 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.0e-07 61.6 275 30.5
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.0e-07 61.6 270 26.7
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 1.4e-07 61.2 271 29.5
TPR.G16980 Trifolium pratense HOM05D003020 ORTHO05D003226 2.3e-07 60.5 225 32.0
Glyma.20G178000 Glycine max HOM05D003020 ORTHO05D003226 3.0e-07 60.1 271 30.3
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 3.0e-07 60.1 265 27.5
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 3.0e-07 60.1 203 30.5
Sabra08G0029800 Salix brachista HOM05D031226 ORTHO05D037394 5.2e-07 59.3 227 33.9
Nitab4.5_0000233g0290 Nicotiana tabacum HOM05D012114 ORTHO05D014153 6.8e-07 58.9 244 31.1
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 8.8e-07 58.5 266 31.2
Psat6g184920 Pisum sativum HOM05D003020 ORTHO05D003226 8.8e-07 58.5 281 29.2
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 1.2e-06 58.2 284 28.9
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 1.2e-06 58.2 264 29.5
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 1.5e-06 57.8 189 34.4
Nitab4.5_0000233g0300 Nicotiana tabacum HOM05D012114 ORTHO05D014153 1.5e-06 57.8 255 27.5
Nitab4.5_0000534g0070 Nicotiana tabacum HOM05D012114 ORTHO05D014153 1.5e-06 57.8 102 39.2
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.5e-06 57.8 206 35.0
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.0e-06 57.4 222 34.2
Manes.10G043900 Manihot esculenta HOM05D010162 ORTHO05D010383 2.0e-06 57.4 181 33.1
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 2.6e-06 57.0 146 30.8
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 2.6e-06 57.0 268 29.9
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 2.6e-06 57.0 204 35.3
Eucgr.G02809 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.4e-06 56.6 262 28.6
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 3.4e-06 56.6 274 29.2
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 3.4e-06 56.6 183 33.9
Sabra18G0080000 Salix brachista HOM05D003020 ORTHO05D003226 4.4e-06 56.2 207 34.3
Nitab4.5_0000534g0090 Nicotiana tabacum HOM05D012114 ORTHO05D014153 5.7e-06 55.8 102 37.3
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 5.7e-06 55.8 223 30.0
DCAR_006459 Daucus carota HOM05D030167 ORTHO05D035027 9.8e-06 55.1 263 28.1


User provided reference genes

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