Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.8e-174 615.1 304 100.0
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 7.7e-132 474.2 261 89.3
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.5e-119 433.3 262 79.4
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.6e-119 432.6 254 82.3
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.9e-116 421.4 257 80.9
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 5.0e-115 418.3 255 80.4
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.5e-114 416.0 255 78.0
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.2e-113 413.7 259 79.9
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.2e-111 407.1 254 75.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 2.0e-111 406.4 254 78.0
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.7e-110 403.3 258 76.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.7e-110 403.3 281 70.8
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.2e-110 402.9 254 77.6
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 6.3e-110 401.4 258 76.7
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.4e-109 399.4 258 76.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.1e-109 398.7 252 77.4
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 5.4e-109 398.3 256 77.7
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 7.0e-109 397.9 254 75.2
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.6e-108 396.7 251 76.9
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.7e-108 396.0 253 74.7
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.7e-108 396.0 267 74.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 4.5e-108 395.2 256 75.8
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 4.5e-108 395.2 260 72.7
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 5.9e-108 394.8 256 76.2
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 7.7e-108 394.4 257 75.1
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.0e-107 394.0 262 73.3
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.0e-107 394.0 254 75.2
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.3e-107 393.7 251 76.5
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.3e-107 392.9 254 76.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.3e-107 392.9 258 73.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.6e-107 391.3 258 74.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 8.6e-107 391.0 256 77.3
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.9e-106 389.8 256 74.2
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.3e-106 389.0 257 74.3
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 3.3e-106 389.0 252 75.8
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 4.2e-106 388.7 256 75.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.2e-106 388.7 256 75.0
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 5.5e-106 388.3 259 73.7
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 9.5e-106 387.5 254 73.6
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.5e-106 387.5 254 74.4
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.6e-105 386.7 256 73.0
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.7e-105 385.2 256 72.3
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 6.1e-105 384.8 256 73.4
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.0e-104 384.0 260 72.3
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.4e-104 383.6 277 70.0
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.4e-104 383.6 255 73.7
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.8e-104 383.3 253 74.3
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.8e-104 383.3 257 72.4
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.8e-104 383.3 255 71.8
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.3e-104 382.9 256 73.8
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.2e-104 381.7 260 72.3
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 8.9e-104 380.9 253 71.9
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.2e-103 380.6 256 73.0
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.5e-103 380.2 255 72.5
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.6e-103 379.4 256 72.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 7.5e-103 377.9 256 71.1
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 7.5e-103 377.9 256 71.1
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.3e-102 377.1 255 71.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.2e-102 376.3 255 70.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.2e-102 376.3 255 72.2
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.7e-102 375.6 255 70.6
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.9e-102 375.2 251 71.7
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.9e-102 375.2 257 71.6
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.1e-101 374.0 255 71.0
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.4e-101 373.6 253 72.3
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.4e-101 372.9 252 73.4
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.2e-100 370.5 250 74.0
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.6e-100 370.2 254 70.9
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.7e-100 369.4 262 68.7
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.7e-100 369.4 251 70.1
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.5e-100 369.0 251 70.5
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 3.5e-100 369.0 256 72.3
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.1e-98 364.0 256 69.5
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.3e-98 362.1 254 70.5
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 5.6e-98 361.7 253 68.4
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 5.6e-98 361.7 253 70.0
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 9.5e-98 360.9 253 67.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.1e-97 359.8 253 66.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 2.1e-97 359.8 262 67.6
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 2.8e-97 359.4 253 68.4
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.8e-97 359.4 253 68.0
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 2.8e-97 359.4 251 67.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 4.7e-97 358.6 262 66.8
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 6.1e-97 358.2 253 69.2
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.0e-96 357.5 251 67.7
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.4e-96 357.1 251 67.3
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 5.2e-96 355.1 251 66.5
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 5.2e-96 355.1 253 68.0
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 6.8e-96 354.8 253 66.4
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.2e-95 354.0 253 66.0
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.0e-95 353.2 253 68.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.0e-95 353.2 254 68.9
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.6e-95 352.8 251 66.1
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 3.4e-95 352.4 253 65.2
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.5e-95 351.3 251 66.1
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 8.3e-94 347.8 254 68.5
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 8.3e-94 347.8 262 66.0
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.1e-93 347.4 257 67.7
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.4e-93 347.1 254 67.7
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.9e-93 346.7 252 65.1
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.9e-93 346.7 257 66.1
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 2.4e-93 346.3 252 64.7
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.4e-93 346.3 252 64.7
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 3.2e-93 345.9 252 64.7
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 6.0e-92 341.7 249 66.3
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.3e-91 340.5 235 70.2
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 5.0e-91 338.6 251 66.9
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 5.6e-90 335.1 353 55.0
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 4.7e-89 332.0 207 79.7
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.8e-88 328.2 202 80.7
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.7e-84 316.2 227 68.3
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 3.5e-84 315.8 199 79.4
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.6e-84 315.5 262 62.6
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 7.8e-84 314.7 250 64.8
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.9e-83 312.4 205 73.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 8.9e-80 301.2 253 61.7
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 3.4e-79 299.3 476 39.1
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.9e-78 296.2 313 52.7
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-75 286.6 224 63.8
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.5e-74 283.9 252 60.3
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.4e-72 277.3 221 62.4
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.8e-72 276.9 251 56.2
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.4e-69 267.3 613 33.1
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 9.3e-69 264.6 204 66.7
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 6.0e-68 261.9 255 56.9
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.0e-68 261.9 258 50.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.1e-64 251.1 258 48.4
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 4.0e-64 249.2 253 50.2
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.4e-56 224.2 151 72.2
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 5.4e-53 212.2 251 43.8
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 6.5e-46 188.7 279 36.6
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 7.1e-45 185.3 110 81.8
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.6e-33 147.5 75 88.0
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.6e-33 147.5 86 82.6
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.5e-29 132.5 95 67.4
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.6e-28 131.0 95 67.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 4.6e-28 129.4 119 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 3.4e-23 113.2 138 39.9
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.0e-19 100.1 83 57.8
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 7.5e-10 68.9 62 58.1
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 2.2e-06 57.4 69 43.5


User provided reference genes

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