Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.1e-159 566.6 290 100.0
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.9e-120 435.6 298 77.2
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.9e-119 433.0 306 74.5
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.5e-116 422.5 306 72.5
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.6e-115 419.9 309 72.5
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.7e-115 418.7 306 72.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 4.0e-114 415.2 307 70.4
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.5e-113 413.3 306 70.9
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.0e-112 410.6 306 70.6
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.7e-112 409.8 307 71.7
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.2e-112 409.5 306 70.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.9e-112 409.1 306 69.6
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 6.5e-112 407.9 298 71.5
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.1e-111 407.1 306 69.9
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.9e-111 406.4 316 70.3
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.5e-111 406.0 306 69.3
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.5e-111 406.0 298 71.1
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.2e-111 405.2 306 69.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.2e-110 403.7 306 68.6
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 3.5e-110 402.1 306 68.6
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 4.6e-110 401.7 309 68.9
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.8e-109 399.8 309 70.9
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.8e-109 399.8 306 68.6
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.8e-109 399.8 307 68.7
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.8e-109 399.8 310 69.7
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.5e-108 396.0 297 70.0
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.8e-107 392.5 306 68.3
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.7e-107 392.1 300 68.0
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.7e-107 392.1 306 68.6
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.8e-107 391.7 310 68.4
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.3e-107 391.3 306 67.3
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.4e-106 390.2 341 63.6
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.4e-106 390.2 301 66.1
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 4.1e-106 388.7 308 66.9
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.3e-106 388.3 301 67.1
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 9.0e-106 387.5 306 65.0
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.0e-106 387.5 301 67.1
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.0e-106 387.5 309 66.7
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 2.0e-105 386.3 295 66.8
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.0e-105 386.3 306 67.0
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.6e-105 386.0 306 64.4
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.6e-105 386.0 288 68.4
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 2.6e-105 386.0 310 66.5
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.4e-105 385.6 293 68.9
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 4.5e-105 385.2 295 67.5
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 5.9e-105 384.8 294 67.7
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 7.6e-105 384.4 307 66.8
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.0e-104 384.0 300 66.0
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.0e-104 384.0 300 66.0
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.7e-104 383.3 288 68.4
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.7e-104 383.3 337 63.8
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.7e-104 383.3 300 66.3
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.8e-104 382.1 306 64.1
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 6.5e-104 381.3 306 66.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 6.5e-104 381.3 306 66.3
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 6.5e-104 381.3 295 66.8
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 8.5e-104 380.9 306 66.0
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.1e-103 380.6 306 64.7
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 7.2e-103 377.9 310 65.8
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 9.3e-103 377.5 298 67.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-102 377.1 300 64.7
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.2e-102 377.1 307 64.2
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.7e-102 375.9 343 61.2
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 7.9e-102 374.4 307 64.8
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-101 374.0 309 64.7
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.3e-101 372.9 302 65.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.3e-101 372.9 304 62.5
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.1e-101 371.7 299 66.6
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 8.7e-101 370.9 308 64.0
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.3e-100 369.0 284 68.7
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 4.3e-100 368.6 303 65.3
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 2.2e-99 366.3 309 63.4
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.3e-99 364.8 307 62.9
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-98 364.0 314 62.7
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 5.3e-98 361.7 300 63.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.0e-97 359.8 299 63.9
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.6e-97 359.4 300 63.7
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 4.5e-97 358.6 312 63.1
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 5.9e-97 358.2 311 63.0
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 7.7e-97 357.8 307 63.2
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.2e-96 356.3 306 62.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.8e-96 355.5 300 63.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 5.0e-96 355.1 306 62.1
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 5.0e-96 355.1 300 62.7
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 5.0e-96 355.1 300 63.3
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 5.0e-96 355.1 381 53.0
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 6.5e-96 354.8 297 63.0
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 6.5e-96 354.8 300 63.3
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 6.5e-96 354.8 348 55.5
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 8.5e-96 354.4 302 62.6
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.5e-96 354.4 303 61.1
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.4e-95 353.6 300 62.7
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.5e-95 352.8 294 63.6
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.2e-95 352.4 300 62.7
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 5.5e-95 351.7 310 61.0
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 7.2e-95 351.3 345 57.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 7.2e-95 351.3 312 62.2
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.4e-95 350.9 256 72.7
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.2e-94 350.5 305 62.3
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 2.7e-94 349.4 294 63.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.7e-94 349.4 293 63.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.6e-94 349.0 269 66.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 4.6e-94 348.6 285 63.9
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-93 347.4 288 63.2
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.0e-93 347.4 313 61.7
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-93 347.1 308 60.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-93 346.7 288 63.2
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 8.8e-93 344.4 286 62.9
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 8.8e-93 344.4 291 62.5
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.0e-92 343.2 302 59.9
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.4e-92 342.0 296 61.1
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.7e-91 340.1 296 60.8
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-91 340.1 306 58.8
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.2e-91 339.7 312 60.6
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 4.8e-91 338.6 264 64.4
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.2e-91 337.8 296 60.8
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.4e-90 337.0 275 63.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 6.9e-90 334.7 307 58.6
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 5.9e-89 331.6 312 59.0
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.2e-87 325.9 256 66.4
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.2e-86 323.9 274 63.1
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 3.3e-84 315.8 310 54.8
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 4.4e-84 315.5 302 54.3
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.3e-83 311.6 298 56.0
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.3e-80 303.9 296 56.1
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.3e-80 303.9 307 54.1
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.2e-79 299.3 282 57.1
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 5.2e-77 292.0 229 66.8
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.8e-74 283.5 276 53.3
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.0e-69 267.7 213 66.2
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 4.4e-68 262.3 274 54.0
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.3e-67 258.1 298 45.6
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-66 257.3 198 64.6
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.2e-65 254.2 297 47.5
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.7e-65 253.1 233 60.1
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.7e-65 253.1 301 47.8
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.3e-64 250.8 280 48.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.9e-64 249.6 277 49.1
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-63 247.7 186 67.2
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 4.2e-63 245.7 273 50.2
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 7.2e-63 245.0 297 45.5
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 2.1e-62 243.4 280 47.1
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 4.7e-62 242.3 280 46.8
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.6e-60 236.5 148 77.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 2.8e-59 233.0 195 62.6
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.4e-58 229.9 273 49.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.7e-57 226.5 300 48.0
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.5e-55 219.9 181 60.2
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.0e-52 210.3 180 61.7
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 3.4e-52 209.5 146 72.6
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.9e-51 205.7 233 48.1
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.4e-45 187.6 149 64.4
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.2e-44 184.5 210 54.3
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 3.2e-42 176.4 217 44.2
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.7e-40 170.6 167 49.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 6.6e-32 142.1 288 30.2
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 3.3e-23 113.2 262 30.5
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 3.4e-20 103.2 126 49.2
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.0e-16 91.7 312 24.7
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 8.7e-16 88.6 82 56.1
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.6e-14 83.2 181 37.6
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.1e-13 81.6 288 27.4
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 1.3e-11 74.7 209 25.4
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 9.3e-10 68.6 58 55.2
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.6e-09 67.8 304 26.0
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.1e-09 67.4 64 54.7
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 6.0e-09 65.9 46 67.4


User provided reference genes

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