Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 3.6e-103 378.3 192 100.0
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 1.1e-91 340.1 246 74.8
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 1.8e-70 269.6 191 71.7
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 1.0e-65 253.8 193 69.9
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.1e-64 250.4 193 67.4
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 1.1e-64 250.4 196 67.3
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 9.7e-64 247.3 193 67.9
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 8.2e-63 244.2 194 64.9
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.1e-62 243.8 196 66.8
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 4.1e-62 241.9 188 66.5
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 4.5e-61 238.4 198 65.7
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.3e-60 236.9 184 70.1
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 2.9e-60 235.7 166 72.3
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 2.9e-60 235.7 197 67.0
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 8.5e-60 234.2 181 68.0
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.4e-59 233.4 157 75.2
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 5.5e-59 231.5 178 69.7
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 2.1e-58 229.6 190 63.2
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.4e-57 226.9 194 62.9
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 1.4e-57 226.9 184 66.3
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.5e-56 223.4 184 66.3
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 9.7e-56 220.7 184 65.2
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 9.7e-56 220.7 190 62.6
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 2.2e-55 219.5 192 60.9
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 4.8e-55 218.4 184 64.1
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 4.8e-55 218.4 184 64.7
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 4.8e-55 218.4 195 62.1
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 4.8e-55 218.4 171 66.7
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 3.1e-54 215.7 185 63.2
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 5.3e-54 214.9 191 61.3
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 4.5e-53 211.8 192 62.5
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.3e-52 210.3 166 66.9
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 1.7e-52 209.9 193 60.1
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 2.2e-52 209.5 191 58.1
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 2.2e-52 209.5 194 59.8
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 2.9e-52 209.1 190 60.0
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 3.8e-52 208.8 182 62.1
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 5.0e-52 208.4 193 57.0
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 6.5e-52 208.0 186 58.6
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.2e-50 203.8 185 57.3
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 1.6e-50 203.4 185 59.5
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 1.6e-50 203.4 194 56.7
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 6.1e-50 201.4 185 59.5
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 6.1e-50 201.4 193 59.6
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 7.9e-50 201.1 167 62.9
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 1.0e-49 200.7 185 59.5
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.4e-49 200.3 189 56.1
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.3e-49 199.5 184 57.6
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 2.0e-48 196.4 191 58.6
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.3e-47 193.7 190 56.3
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.7e-47 193.4 196 56.1
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 1.7e-47 193.4 185 54.6
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 2.8e-47 192.6 169 61.5
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 3.7e-47 192.2 195 56.4
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.8e-46 189.9 192 56.8
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 2.4e-46 189.5 165 59.4
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 2.0e-45 186.4 190 56.8
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 2.0e-45 186.4 190 56.8
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 2.0e-45 186.4 190 56.8
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.6e-45 186.0 147 65.3
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 3.4e-45 185.7 191 53.9
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 5.9e-45 184.9 168 56.0
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 1.0e-44 184.1 190 55.3
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 1.1e-43 180.6 194 55.2
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 1.4e-43 180.3 190 56.8
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 1.9e-43 179.9 167 58.1
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 2.5e-43 179.5 176 55.7
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 7.2e-43 177.9 106 77.4
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 6.1e-42 174.9 195 50.8
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 6.1e-42 174.9 182 50.0
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 8.0e-42 174.5 192 54.2
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 3.0e-41 172.6 190 52.6
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.0e-40 169.9 205 48.8
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 3.3e-40 169.1 189 50.3
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 5.7e-40 168.3 100 82.0
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 7.4e-40 167.9 123 67.5
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 7.4e-40 167.9 166 54.2
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 9.7e-40 167.5 146 59.6
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.3e-39 167.2 165 53.9
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.7e-39 166.8 167 50.3
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 2.2e-39 166.4 192 51.6
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 2.2e-39 166.4 160 55.0
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.8e-39 166.0 237 43.9
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 8.2e-39 164.5 237 43.5
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 1.1e-38 164.1 237 43.9
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.1e-38 164.1 190 47.9
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 1.1e-38 164.1 188 47.3
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 1.4e-38 163.7 165 53.3
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.4e-38 163.7 197 52.8
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.4e-38 162.9 237 43.5
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 4.1e-38 162.2 192 49.5
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 7.0e-38 161.4 145 57.9
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 7.0e-38 161.4 84 90.5
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 9.1e-38 161.0 203 52.2
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 9.1e-38 161.0 100 75.0
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 3.5e-37 159.1 198 50.5
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.5e-37 159.1 237 43.0
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 5.9e-37 158.3 166 53.0
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 5.9e-37 158.3 199 50.8
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 5.9e-37 158.3 198 50.5
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 2.9e-36 156.0 192 48.4
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 2.9e-36 156.0 141 55.3
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 5.0e-36 155.2 198 50.0
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.1e-35 154.1 199 51.3
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 1.5e-35 153.7 198 49.5
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 1.9e-35 153.3 117 62.4
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 3.2e-35 152.5 198 49.0
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 7.2e-35 151.4 198 49.0
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 9.4e-35 151.0 198 49.0
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 1.2e-34 150.6 196 50.0
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 4.7e-34 148.7 198 48.0
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.5e-32 143.7 213 41.3
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 7.7e-29 131.3 77 72.7
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 7.7e-29 131.3 162 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 3.8e-28 129.0 193 43.0
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.8e-28 129.0 92 63.0
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 4.7e-26 122.1 119 49.6
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 4.0e-25 119.0 106 54.7
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.5e-24 117.1 96 60.4
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 3.4e-24 115.9 168 40.5
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 7.5e-24 114.8 158 41.8
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.2e-23 113.2 115 53.9
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.7e-20 103.6 72 65.3
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 1.5e-19 100.5 122 44.3
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 5.5e-19 98.6 106 45.3
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 4.7e-18 95.5 102 53.9
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.3e-17 93.2 108 48.1
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 8.9e-17 91.3 99 52.5
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.5e-16 90.5 112 49.1
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.5e-16 90.5 93 55.9
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 4.4e-16 89.0 168 36.9
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 6.6e-12 75.1 105 40.0
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 4.3e-11 72.4 85 45.9
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.0e-10 68.2 102 44.1
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.6e-08 63.2 128 32.0
SGA_v2.0_scaffold134G34742 Striga asiatica HOM05D005893 ORTHO05D007295 1.1e-06 57.8 128 35.2
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 3.2e-06 56.2 92 31.5


User provided reference genes

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