Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 5.4e-156 554.3 281 100.0
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 6.3e-104 381.3 274 73.4
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-103 380.2 272 74.3
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 5.3e-103 378.3 272 73.9
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.0e-97 359.8 283 71.0
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.6e-97 359.4 273 69.6
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 7.4e-89 331.3 275 64.4
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.8e-88 329.3 244 73.4
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 4.8e-88 328.6 271 64.9
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.8e-87 326.6 276 63.0
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 4.1e-87 325.5 262 66.0
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-86 323.9 269 65.1
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.6e-86 323.6 269 64.7
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.6e-86 323.6 269 64.3
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.0e-86 323.2 269 64.7
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.0e-86 323.2 269 64.7
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 3.5e-86 322.4 269 62.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.3e-85 320.5 275 64.7
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.7e-85 320.1 286 61.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 5.0e-85 318.5 283 61.5
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.0e-85 318.5 269 63.9
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 6.5e-85 318.2 269 64.7
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.2e-84 314.7 237 70.0
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 9.4e-84 314.3 258 65.5
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 6.7e-82 308.1 278 61.2
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 7.5e-81 304.7 268 60.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.2e-80 303.1 228 70.2
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.2e-80 303.1 268 62.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.7e-80 302.4 279 59.9
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 8.2e-80 301.2 265 60.8
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.1e-79 300.8 272 63.6
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 3.1e-79 299.3 274 60.6
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.2e-78 297.4 278 59.4
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 2.0e-78 296.6 277 57.8
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.7e-78 296.2 225 69.3
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 4.5e-78 295.4 265 58.5
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 5.9e-78 295.0 267 58.1
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.0e-77 294.3 277 59.9
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.0e-77 294.3 274 56.9
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 3.2e-76 289.3 270 60.0
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 3.2e-76 289.3 267 59.2
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 5.5e-76 288.5 260 59.6
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 5.5e-76 288.5 271 57.9
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.6e-75 287.0 263 59.3
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.1e-75 286.6 263 58.2
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.6e-75 285.8 266 59.4
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 4.7e-75 285.4 260 58.5
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.8e-74 283.5 266 59.0
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.4e-73 279.3 276 54.7
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 4.4e-73 278.9 272 59.2
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.7e-72 276.9 275 55.6
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.8e-72 276.2 261 57.9
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 4.8e-72 275.4 272 53.7
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 8.3e-72 274.6 263 57.8
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.8e-71 273.5 261 56.3
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.4e-71 273.1 260 58.1
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 5.4e-71 271.9 257 59.9
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.2e-70 270.8 273 57.9
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.6e-70 270.4 266 57.1
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 2.7e-70 269.6 277 54.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 4.5e-70 268.9 257 56.8
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.7e-69 266.9 261 55.2
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 2.9e-69 266.2 262 55.0
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.9e-69 266.2 263 53.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 5.0e-69 265.4 274 57.7
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.5e-69 265.0 262 54.6
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.2e-68 261.5 263 52.5
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 2.1e-67 260.0 263 52.5
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 5.2e-66 255.4 253 55.3
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 9.8e-65 251.1 273 53.8
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.2e-64 250.0 267 50.6
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.4e-63 246.5 269 50.9
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 4.1e-63 245.7 241 57.3
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.4e-63 245.4 273 49.1
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 9.2e-63 244.6 257 54.1
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.2e-62 244.2 258 53.1
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.0e-62 243.4 262 53.4
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.5e-62 242.3 257 50.6
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.5e-60 237.3 249 52.2
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 3.6e-59 232.6 255 50.2
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 6.1e-59 231.9 272 47.4
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.0e-58 231.1 253 50.2
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.0e-58 231.1 255 49.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.4e-58 230.7 258 50.8
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.8e-58 230.3 274 51.1
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.3e-58 229.9 257 49.0
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.3e-58 229.9 257 49.0
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.5e-57 227.3 264 49.6
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 7.5e-57 224.9 171 66.1
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.2e-56 223.4 258 48.4
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.2e-56 223.4 259 50.6
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.9e-56 223.0 259 49.0
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.9e-56 222.2 182 62.1
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 6.4e-56 221.9 259 51.7
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 6.4e-56 221.9 273 47.3
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 2.4e-55 219.9 279 51.3
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.1e-55 219.2 256 49.6
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.2e-55 218.0 204 62.3
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 9.2e-55 218.0 259 47.9
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.6e-54 217.2 263 49.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.6e-54 217.2 257 49.8
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 2.7e-54 216.5 262 50.4
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 6.0e-54 215.3 269 46.5
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.8e-54 214.9 284 45.1
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.0e-53 214.5 263 46.4
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.3e-53 214.2 275 47.6
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-53 214.2 203 57.6
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 5.0e-53 212.2 259 49.4
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.9e-52 210.3 266 48.5
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-52 209.9 251 46.6
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 3.3e-52 209.5 178 60.7
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 7.3e-52 208.4 257 45.9
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 7.3e-52 208.4 270 48.5
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.2e-51 207.6 268 45.9
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.6e-51 207.2 263 47.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 8.0e-51 204.9 259 46.3
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.1e-50 204.5 257 46.7
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.5e-49 200.7 262 44.7
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 2.6e-49 199.9 253 45.8
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 3.4e-49 199.5 268 45.5
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.4e-49 199.5 273 45.4
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.4e-49 199.5 273 45.4
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 7.5e-49 198.4 260 45.8
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.2e-48 196.8 259 45.6
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 6.4e-48 195.3 264 45.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.4e-47 194.1 273 46.2
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 9.2e-47 191.4 267 44.6
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 3.5e-46 189.5 200 52.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 6.0e-46 188.7 265 43.8
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.0e-46 188.7 200 51.5
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.0e-46 188.7 200 51.5
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.3e-45 187.6 220 48.6
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 2.3e-45 186.8 237 50.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.5e-44 184.1 275 41.1
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.5e-44 183.3 200 51.0
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.8e-43 179.9 276 43.5
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 2.0e-41 173.7 247 42.1
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 1.3e-40 171.0 168 51.2
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.3e-40 171.0 267 42.7
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.2e-40 170.2 151 58.9
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-39 167.5 106 80.2
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.4e-39 167.5 117 68.4
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.0e-37 161.4 118 66.1
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.0e-37 161.4 125 60.8
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.9e-36 157.1 145 53.1
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.2e-35 154.5 170 54.7
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-31 141.0 125 56.0
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.8e-26 124.0 125 49.6
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.0e-22 109.0 83 68.7
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 3.0e-21 106.7 126 45.2
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 5.8e-17 92.4 263 31.2
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.1e-15 85.5 71 62.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 4.6e-14 82.8 111 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 6.7e-13 79.0 260 26.5
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 4.3e-12 76.3 105 34.3
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 4.3e-12 76.3 206 28.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 9.6e-12 75.1 276 26.8
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 4.5e-09 66.2 272 27.2


User provided reference genes

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