Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-197 693.0 373 100.0
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 2.2e-152 542.7 376 80.3
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 5.0e-149 531.6 376 80.9
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 6.3e-144 514.6 373 79.1
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 3.8e-141 505.4 380 71.1
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 4.2e-140 501.9 372 72.0
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 9.4e-140 500.7 377 70.3
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.7e-139 499.2 377 74.3
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 1.8e-138 496.5 377 76.1
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.3e-138 496.1 423 67.1
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 9.7e-137 490.7 374 69.3
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.2e-134 483.8 382 71.2
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 4.5e-134 481.9 377 68.4
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 5.9e-134 481.5 355 71.3
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.3e-133 480.3 354 73.4
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.3e-133 480.3 382 71.5
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.7e-133 479.9 402 69.4
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 2.2e-133 479.6 380 73.7
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 3.8e-133 478.8 378 71.7
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 6.5e-133 478.0 377 69.2
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 8.5e-133 477.6 377 68.7
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 1.5e-132 476.9 355 69.0
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 2.5e-132 476.1 377 67.6
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 5.5e-132 474.9 383 68.4
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 1.0e-130 470.7 355 75.2
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 3.0e-130 469.2 377 67.4
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 6.8e-130 468.0 375 68.5
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.2e-129 467.2 377 70.6
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.3e-128 463.8 388 70.4
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 1.7e-128 463.4 424 61.3
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.7e-128 463.4 377 69.0
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 2.2e-128 463.0 377 68.2
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.4e-127 460.3 377 67.6
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 2.4e-127 459.5 382 69.4
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.4e-127 459.5 377 68.2
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.1e-127 457.6 377 67.4
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.2e-126 457.2 353 72.8
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 2.7e-126 456.1 378 68.8
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 4.5e-126 455.3 377 66.3
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.7e-125 453.4 377 66.8
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.9e-125 452.6 377 66.6
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.8e-125 452.2 355 67.9
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 6.5e-125 451.4 355 67.3
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.5e-125 451.4 376 65.7
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.1e-124 450.7 374 67.4
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 2.5e-124 449.5 378 69.8
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 5.5e-124 448.4 380 65.8
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.8e-123 446.0 400 63.5
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 4.7e-123 445.3 416 63.0
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.7e-123 445.3 381 71.1
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 6.1e-123 444.9 355 67.6
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 6.8e-122 441.4 358 69.3
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.2e-121 440.7 376 71.5
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.6e-121 439.5 359 71.0
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 3.4e-121 439.1 383 67.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 4.4e-121 438.7 390 66.7
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.2e-120 436.4 355 70.4
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.2e-120 436.4 390 62.6
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 3.7e-120 435.6 352 69.3
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 6.3e-120 434.9 374 69.5
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 8.3e-120 434.5 361 66.5
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 5.4e-119 431.8 374 69.0
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.2e-119 431.0 353 64.9
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.6e-118 430.3 374 69.0
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.6e-118 430.3 355 67.9
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.7e-118 429.5 353 64.6
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.7e-118 429.5 380 63.2
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.5e-116 421.0 355 65.4
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 9.5e-116 421.0 427 60.9
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.6e-115 420.2 369 62.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 3.6e-115 419.1 352 64.8
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 4.0e-114 415.6 358 65.9
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 4.4e-113 412.1 442 56.3
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.6e-110 403.7 380 61.8
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.0e-109 399.4 383 60.6
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 1.5e-108 397.1 363 61.7
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.9e-108 396.7 373 61.9
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.3e-108 394.8 383 62.7
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.6e-107 393.7 392 57.4
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 3.6e-107 392.5 378 62.2
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 6.2e-107 391.7 360 60.3
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.4e-106 390.6 360 63.1
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 1.8e-106 390.2 377 64.5
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 6.8e-106 388.3 379 61.2
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 2.0e-105 386.7 393 58.0
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.6e-105 386.3 378 60.3
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.4e-105 386.0 379 60.9
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.2e-104 383.3 360 61.4
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 8.3e-104 381.3 376 59.6
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 9.2e-103 377.9 357 62.2
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 9.2e-103 377.9 381 62.2
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.7e-102 376.3 355 60.0
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 3.5e-102 375.9 358 60.1
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 5.0e-101 372.1 326 66.3
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 6.6e-101 371.7 368 62.2
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.9e-100 370.2 377 55.7
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 4.3e-100 369.0 381 59.3
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 8.1e-99 364.8 399 58.1
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 6.8e-98 361.7 377 54.9
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.6e-97 359.8 360 60.8
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 7.5e-97 358.2 417 54.7
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.9e-95 353.6 382 59.7
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.9e-95 353.6 282 68.4
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 7.1e-95 351.7 480 50.4
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 9.2e-95 351.3 357 57.1
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 3.5e-94 349.4 385 56.9
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.0e-93 347.8 506 48.4
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 2.3e-93 346.7 380 58.2
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-92 344.4 380 58.4
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 1.1e-92 344.4 380 58.4
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.5e-92 344.0 357 54.6
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.5e-92 344.0 373 55.0
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.5e-92 344.0 363 56.7
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.1e-91 340.1 356 57.9
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 3.6e-91 339.3 377 55.7
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 3.1e-90 336.3 355 56.6
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 5.2e-90 335.5 284 69.7
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.4e-89 332.8 321 60.4
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 1.7e-88 330.5 356 53.1
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 5.1e-85 318.9 390 51.3
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.5e-84 317.4 339 56.3
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.9e-84 317.0 364 55.5
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 6.2e-83 312.0 400 51.5
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.1e-82 311.2 358 51.7
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 2.0e-81 307.0 182 98.9
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 6.6e-77 292.0 346 53.2
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.9e-76 290.4 284 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 7.3e-76 288.5 396 49.5
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 5.8e-73 278.9 407 49.4
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 9.3e-71 271.6 304 58.2
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 9.3e-71 271.6 304 58.2
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.6e-70 270.8 165 78.8
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.6e-70 270.8 271 63.1
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 2.6e-65 253.4 249 57.4
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 6.9e-58 228.8 374 42.5
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.1e-55 221.5 211 57.8
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.4e-50 203.8 313 47.3
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.1e-50 203.0 188 62.2
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 4.5e-49 199.5 98 92.9
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-46 190.7 99 89.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-46 190.7 99 89.9
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.1e-44 184.9 684 27.8
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.4e-42 177.9 233 46.8
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.1e-42 176.4 93 91.4
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 1.3e-40 171.4 220 51.4
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.2e-39 166.8 230 48.3
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 4.1e-34 149.8 89 84.3
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.2e-31 140.2 365 34.2
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 1.2e-30 138.3 207 48.8
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 7.4e-28 129.0 71 83.1
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 8.2e-27 125.6 84 76.2
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 4.2e-23 113.2 83 57.8
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 6.1e-22 109.4 94 53.2
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.1e-22 109.4 65 80.0
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.8e-21 107.8 159 44.7
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 2.0e-17 94.4 76 61.8
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 3.7e-11 73.6 61 60.7
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 1.1e-07 62.0 74 47.3
Sopen12g027930 Solanum pennellii HOM05D004432 ORTHO05D051027 2.1e-06 57.8 55 58.2


User provided reference genes

Program Settings