Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 3.1e-148 528.5 278 100.0
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 2.8e-120 435.6 304 78.6
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.6e-120 435.3 304 78.6
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 3.1e-119 432.2 304 76.6
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.2e-118 430.3 304 77.3
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.3e-117 426.8 304 77.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.1e-116 423.7 304 75.0
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.9e-116 422.9 304 76.3
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.6e-115 418.3 304 74.0
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 6.0e-115 417.9 304 74.7
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.0e-114 417.2 301 74.4
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.0e-114 415.6 304 73.4
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 5.1e-114 414.8 304 73.4
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 6.6e-114 414.5 304 73.0
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 6.6e-114 414.5 304 73.0
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 6.6e-114 414.5 304 73.0
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 2.1e-112 409.5 304 73.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 3.6e-112 408.7 304 72.7
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.6e-112 408.7 304 72.4
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 6.2e-112 407.9 304 72.4
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 2.4e-111 406.0 304 73.4
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 6.8e-111 404.4 304 73.7
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 8.9e-111 404.1 304 73.4
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 8.9e-111 404.1 296 74.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 8.9e-111 404.1 297 74.1
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.0e-110 402.9 304 71.4
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 2.0e-110 402.9 303 73.3
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 3.4e-110 402.1 297 72.7
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 5.8e-110 401.4 304 71.4
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 7.6e-110 401.0 304 73.7
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.2e-109 399.4 304 72.0
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 2.2e-109 399.4 303 71.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 2.2e-109 399.4 303 71.6
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 2.9e-109 399.1 281 78.6
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.8e-109 398.7 304 71.4
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.8e-109 398.7 304 71.4
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 4.9e-109 398.3 295 72.9
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 6.4e-109 397.9 297 72.7
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.1e-108 397.1 293 73.7
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.1e-108 397.1 305 71.1
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.4e-108 396.7 300 71.3
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.4e-108 396.7 304 71.1
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.4e-108 396.7 304 71.1
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 2.4e-108 396.0 304 71.7
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.4e-108 396.0 297 73.1
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-108 395.6 293 73.4
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 4.2e-108 395.2 304 71.1
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.2e-107 393.7 293 73.0
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.2e-107 393.7 301 70.4
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 2.7e-107 392.5 295 73.6
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.7e-107 392.5 297 71.7
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 2.7e-107 392.5 297 71.7
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.5e-107 392.1 305 70.2
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 7.8e-107 391.0 298 70.8
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 2.3e-106 389.4 290 72.1
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.3e-106 389.4 304 69.4
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.3e-106 389.4 294 71.8
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.0e-106 389.0 304 69.1
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 5.1e-106 388.3 299 70.6
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 6.6e-106 387.9 304 71.1
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.1e-105 387.1 304 70.4
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.9e-105 386.3 304 69.1
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.5e-105 386.0 305 69.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 2.5e-105 386.0 304 68.8
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 5.6e-105 384.8 281 74.7
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 5.6e-105 384.8 304 68.1
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 9.6e-105 384.0 304 70.7
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.1e-104 382.9 305 68.9
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.1e-103 380.6 305 68.9
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 6.9e-103 377.9 305 68.5
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 2.0e-102 376.3 304 69.1
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.0e-102 376.3 304 68.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 2.6e-102 375.9 305 67.9
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 3.4e-102 375.6 305 68.2
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 3.4e-102 375.6 305 67.5
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 5.8e-102 374.8 291 71.5
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.8e-102 374.8 304 66.8
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 9.9e-102 374.0 298 70.5
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 9.9e-102 374.0 304 66.8
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.7e-101 373.2 305 67.2
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 3.8e-101 372.1 305 67.9
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.1e-100 370.5 300 68.0
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.1e-100 370.5 272 73.2
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 1.1e-100 370.5 301 68.1
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.4e-100 370.2 300 68.3
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 3.2e-100 369.0 295 67.5
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 4.2e-100 368.6 296 67.6
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 5.4e-100 368.2 308 66.2
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.4e-100 368.2 281 72.6
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 9.3e-100 367.5 310 65.8
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.2e-99 367.1 309 65.7
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 6.0e-99 364.8 308 64.9
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.0e-98 364.0 304 65.5
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.3e-98 363.6 300 67.7
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 3.0e-98 362.5 315 63.8
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.1e-97 360.5 305 67.2
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.6e-96 356.7 295 67.1
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.1e-96 356.3 281 70.8
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 3.6e-96 355.5 306 64.4
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.4e-95 353.6 297 66.0
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.9e-90 335.5 281 66.5
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 5.6e-89 331.6 273 69.2
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.8e-87 326.6 302 58.3
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 3.1e-87 325.9 292 60.6
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 4.9e-85 318.5 305 58.0
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 8.7e-82 307.8 237 71.7
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 3.0e-74 282.7 261 60.2
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.6e-72 276.9 195 77.4
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.3e-64 250.8 306 48.4
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 4.8e-64 248.8 195 72.3
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 9.1e-63 244.6 162 77.2
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 6.5e-61 238.4 295 50.5
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.1e-60 237.7 195 67.7
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 3.3e-57 226.1 292 47.6
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 9.7e-57 224.6 278 50.0
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.1e-55 219.2 194 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 1.2e-54 217.6 293 46.4
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 5.0e-53 212.2 159 70.4
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.7e-48 197.2 237 54.4
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.4e-47 193.4 211 54.5
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 5.3e-47 192.2 336 39.6
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 4.2e-44 182.6 300 44.7
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 2.4e-39 166.8 160 60.6
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 5.3e-39 165.6 139 65.5
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.7e-37 160.6 99 80.8
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.7e-35 153.3 115 73.9
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 4.0e-34 149.4 111 70.3
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 9.5e-28 128.3 278 36.7
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.8e-27 126.7 97 72.2
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.8e-26 124.0 182 41.2
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 4.7e-19 99.4 295 32.2
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 9.8e-17 91.7 81 59.3
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 5.4e-15 85.9 65 67.7
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 5.4e-15 85.9 71 66.2
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.6e-14 84.3 124 44.4
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 2.0e-14 84.0 46 82.6
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.0e-13 81.6 303 26.4
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 5.6e-12 75.9 185 32.4
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 7.5e-09 65.5 169 32.5
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 2.1e-06 57.4 52 55.8


User provided reference genes

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